Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel von Gerdol, Marco, Moreira, Rebeca, Cruz, Fernando, Gomez-Garrido, Jessica, Vlasova, Anna, Rosani, Umberto, Venier, Paola, Naranjo-Ortiz, Miguel A., Murgarella, Maria, Greco, Samuele, Balseiro, Pablo, Corvelo, Andre, Frias, Leonor, Gut, Marta, Gabaldon, Toni, Pallavicini, Alberto, Canchaya, Carlos, Novoa, Beatriz, Alioto, Tyler S., Posada, David, Figueras, Antonio

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U12DB: a database of orthologous U12-type spliceosomal introns von Alioto, Tyler S

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The odorant receptor repertoire of teleost fish von Alioto, Tyler S, Ngai, John

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The repertoire of olfactory C family G protein-coupled receptors in zebrafish: candidate chemosensory receptors for amino acids von Alioto, Tyler S, Ngai, John

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Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.) von Julca, Irene, Marcet-Houben, Marina, Cruz, Fernando, Gomez-Garrido, Jessica, Gaut, Brandon S., Diez, Concepcion M., Gut, Ivo G., Alioto, Tyler S., Vargas, Pablo, Gabaldon, Toni

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Genome sequence of the olive tree, Olea europaea von Cruz, Fernando, Julca, Irene, Gómez-Garrido, Jèssica, Loska, Damian, Marcet-Houben, Marina, Cano, Emilio, Galán, Beatriz, Frias, Leonor, Ribeca, Paolo, Derdak, Sophia, Gut, Marta, Sánchez-Fernández, Manuel, García, Jose Luis, Gut, Ivo G, Vargas, Pablo, Alioto, Tyler S, Gabaldón, Toni

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U12DB: a database of orthologous U12-type spliceosomal introns von Alioto, Tyler S

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Chromosome anchoring in Senegalese sole (Solea senegalensis) reveals sex-associated markers and genome rearrangements in flatfish von Guerrero-Cózar, Israel, Gomez-Garrido, Jessica, Berbel, Concha, Martinez-Blanch, Juan F., Alioto, Tyler, Claros, M. Gonzalo, Gagnaire, Pierre-Alexandre, Manchado, Manuel

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Using geneid to Identify Genes von Alioto, Tyler, Blanco, Enrique, Parra, Genís, Guigó, Roderic

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Chromosome-level assembly and annotation of the Xyrichtys novacula (Linnaeus, 1758) genome von Cruz, Fernando, Gómez-Garrido, Jèssica, Gut, Marta, Alioto, Tyler S, Pons, Joan, Alós, Josep, Barcelo-Serra, Margarida

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Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain) von Gomez-Garrido, Jessica, Cruz, Fernando, Alioto, Tyler S, Feiner, Nathalie, Uller, Tobias, Gut, Marta, Sanchez Escudero, Ignacio, Tavecchia, Giacomo, Rotger, Andreu, Otalora Acevedo, Katherin Eliana, Baldo, Laura

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Selective single molecule sequencing and assembly of a human Y chromosome of African origin von Kuderna, Lukas F. K., Lizano, Esther, Julià, Eva, Gomez-Garrido, Jessica, Serres-Armero, Aitor, Kuhlwilm, Martin, Alandes, Regina Antoni, Alvarez-Estape, Marina, Juan, David, Simon, Heath, Alioto, Tyler, Gut, Marta, Gut, Ivo, Schierup, Mikkel Heide, Fornas, Oscar, Marques-Bonet, Tomas

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Phylogenomics Identifies an Ancestral Burst of Gene Duplications Predating the Diversification of Aphidomorpha von Julca, Irene, Marcet-Houben, Marina, Cruz, Fernando, Vargas-Chavez, Carlos, Johnston, John Spencer, Gomez-Garrido, Jessica, Frias, Leonor, Corvelo, Andre, Loska, Damian, Camara, Francisco, Gut, Marta, Alioto, Tyler, Latorre, Amparo, Gabaldon, Toni

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Developmental RNA-Seq transcriptomics of haploid germ cells and spermatozoa uncovers novel pathways associated with teleost spermiogenesis von Castro-Arnau, Júlia, Chauvigné, François, Gómez-Garrido, Jessica, Esteve-Codina, Anna, Dabad, Marc, Alioto, Tyler, Finn, Roderick Nigel, Cerdà, Joan

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A chromosome-level reference genome for the common octopus, Octopus vulgaris (Cuvier, 1797) von Destanović, Dalila, Schultz, Darrin T, Styfhals, Ruth, Cruz, Fernando, Gómez-Garrido, Jèssica, Gut, Marta, Gut, Ivo, Fiorito, Graziano, Simakov, Oleg, Alioto, Tyler S, Ponte, Giovanna, Seuntjens, Eve

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Emergence of 16S rRNA methyltransferases among carbapenemase-producing Enterobacterales in Spain studied by whole-genome sequencing von Arca-Suárez, Jorge, Rodiño-Janeiro, Bruno K., Pérez, Astrid, Guijarro-Sánchez, Paula, Vázquez-Ucha, Juan C., Cruz, Fernando, Gómez-Garrido, Jèssica, Alioto, Tyler S., Álvarez-Tejado, Miguel, Gut, Marta, Gut, Ivo, Oviaño, Marina, Beceiro, Alejandro, Bou, Germán, Merino, Irene, Cercenado, Emilia, Gómez, Rosa, Soler, Tamara, Gracia-Ahufinger, Irene, Martín, Lina, Galán, Fátima, Tormo, Nuria, Rodríguez, Juan Carlos, Capilla, Silvia, Marco, Francesc, Quesada, María Dolores, Padilla, Emma, Tubau, Fe, González, Juanjo, López-Calleja, Ana Isabel, del Pozo, José Luis, García, María Inmaculada, Martinez, Mariela, Calvo, Jorge, Mulet, Xavier, Peña, Fernanda, Rodríguez, Ana Isabel, Gude, María José, Fernández, Ana, Fernández, Javier

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Genomics of the expanding pine pathogen Lecanosticta acicola reveals patterns of ongoing genetic admixture von Marcet-Houben, Marina, Cruz, Fernando, Gómez-Garrido, Jéssica, Alioto, Tyler S, Nunez-Rodriguez, Juan Carlos, Mesanza, Nebai, Gut, Marta, Iturritxa, Eugenia, Gabaldon, Toni

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De novo transcriptome sequencing and gene co-expression reveal a genomic basis for drought sensitivity and evidence of a rapid local adaptation on Atlas cedar ( Cedrus atlantica ) von Cobo-Simón, Irene, Gómez-Garrido, Jèssica, Esteve-Codina, Anna, Dabad, Marc, Alioto, Tyler, Maloof, Julin N, Méndez-Cea, Belén, Seco, José Ignacio, Linares, Juan Carlos, Gallego, Francisco Javier

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Atlantic mackerel population structure does not support genetically distinct spawning components von Manuzzi, Alice, Aguirre-Sarabia, Imanol, Díaz-Arce, Natalia, Bekkevold, Dorte, Jansen, Teunis, Gomez-Garrido, Jessica, Alioto, Tyler S., Gut, Marta, Castonguay, Martin, Sanchez-Maroño, Sonia, Álvarez, Paula, Rodriguez-Ezpeleta, Naiara

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Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposure von Nunez, Ana, Esteve-Codina, Anna, Gomez-Garrido, Jessica, Brustolin, Marco, Talavera, Sandra, Berdugo, Miguel, Dabad, Marc, Alioto, Tyler, Bensaid, Albert, Busquets, Nuria

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