A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs) von Faircloth, Brant C, Sorenson, Laurie, Santini, Francesco, Alfaro, Michael E

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Contemporaneous radiations of fungi and plants linked to symbiosis von Lutzoni, François, Nowak, Michael D., Alfaro, Michael E., Reeb, Valérie, Miadlikowska, Jolanta, Krug, Michael, Arnold, A. Elizabeth, Lewis, Louise A., Swofford, David L., Hibbett, David, Hilu, Khidir, James, Timothy Y., Quandt, Dietmar, Magallón, Susana

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Estimating Diversification Rates on Incompletely Sampled Phylogenies: Theoretical Concerns and Practical Solutions von Chang, Jonathan, Rabosky, Daniel L., Alfaro, Michael E.

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geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees von Pennell, Matthew W, Eastman, Jonathan M, Slater, Graham J, Brown, Joseph W, Uyeda, Josef C, FitzJohn, Richard G, Alfaro, Michael E, Harmon, Luke J

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Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation von Rabosky, Daniel L., Santini, Francesco, Eastman, Jonathan, Smith, Stephen A., Sidlauskas, Brian, Chang, Jonathan, Alfaro, Michael E.

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Did genome duplication drive the origin of teleosts? A comparative study of diversification in ray-finned fishes von Santini, Francesco, Harmon, Luke J, Carnevale, Giorgio, Alfaro, Michael E

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An r package and online resource for macroevolutionary studies using the ray‐finned fish tree of life von Chang, Jonathan, Rabosky, Daniel L., Smith, Stephen A., Alfaro, Michael E., Silvestro, Daniele

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Clade age and species richness are decoupled across the eukaryotic tree of life von Rabosky, Daniel L, Slater, Graham J, Alfaro, Michael E

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Spatial and temporal patterns of diversification on the Amazon: A test of the riverine hypothesis for all diurnal primates of Rio Negro and Rio Branco in Brazil von Boubli, Jean P., Ribas, Camila, Lynch Alfaro, Jessica W., Alfaro, Michael E., da Silva, Maria Nazareth F., Pinho, Gabriela M., Farias, Izeni P.

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Nine Exceptional Radiations Plus High Turnover Explain Species Diversity in Jawed Vertebrates von Alfaro, Michael E., Santini, Francesco, Brock, Chad, Alamillo, Hugo, Dornburg, Alex, Rabosky, Daniel L., Carnevale, Giorgio, Harmon, Luke J., Hillis, David M.

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A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES von Eastman, Jonathan M., Alfaro, Michael E., Joyce, Paul, Hipp, Andrew L., Harmon, Luke J.

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Diversity versus disparity and the radiation of modern cetaceans von Slater, Graham J., Price, Samantha A., Santini, Francesco, Alfaro, Michael E.

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Sashimi: A toolkit for facilitating high‐throughput organismal image segmentation using deep learning von Schwartz, Shawn T., Alfaro, Michael E.

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Iterative Ecological Radiation and Convergence during the Evolutionary History of Damselfishes (Pomacentridae) von Frédérich, Bruno, Sorenson, Laurie, Santini, Francesco, Slater, Graham J., Alfaro, Michael E.

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Evolution: Bioluminescent Courtship as an Engine of Diversity von Alfaro, Michael E.

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Explosive Pleistocene range expansion leads to widespread Amazonian sympatry between robust and gracile capuchin monkeys von Lynch Alfaro, Jessica W., Boubli, Jean P., Olson, Link E., Di Fiore, Anthony, Wilson, Bryan, Gutiérrez-Espeleta, Gustavo A., Chiou, Kenneth L., Schulte, Meredith, Neitzel, Sarah, Ross, Vanessa, Schwochow, Doreen, Nguyen, Mai T.T., Farias, Izeni, Janson, Charles H., Alfaro, Michael E.

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A new phylogeny of tetraodontiform fishes (Tetraodontiformes, Acanthomorpha) based on 22 loci von Santini, Francesco, Sorenson, Laurie, Alfaro, Michael E.

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A quantitative workflow for modeling diversification in material culture von Gjesfjeld, Erik, Silvestro, Daniele, Chang, Jonathan, Koch, Bernard, Foster, Jacob G., Alfaro, Michael E.

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A new multi-locus timescale reveals the evolutionary basis of diversity patterns in triggerfishes and filefishes (Balistidae, Monacanthidae; Tetraodontiformes) von Santini, Francesco, Sorenson, Laurie, Alfaro, Michael E.

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Biogeography of squirrel monkeys (genus Saimiri): South-central Amazon origin and rapid pan-Amazonian diversification of a lowland primate von Lynch Alfaro, Jessica W., Boubli, Jean P., Paim, Fernanda P., Ribas, Camila C., Silva, Maria Nazareth F. da, Messias, Mariluce R., Röhe, Fabio, Mercês, Michelle P., Silva Júnior, José S., Silva, Claudia R., Pinho, Gabriela M., Koshkarian, Gohar, Nguyen, Mai T.T., Harada, Maria L., Rabelo, Rafael M., Queiroz, Helder L., Alfaro, Michael E., Farias, Izeni P.

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