Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis von Riley, Nicholas M., Hebert, Alexander S., Westphall, Michael S., Coon, Joshua J.

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Global detection of human variants and isoforms by deep proteome sequencing von Sinitcyn, Pavel, Richards, Alicia L., Weatheritt, Robert J., Brademan, Dain R., Marx, Harald, Shishkova, Evgenia, Meyer, Jesse G., Hebert, Alexander S., Westphall, Michael S., Blencowe, Benjamin J., Cox, Jürgen, Coon, Joshua J.

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Now, More Than Ever, Proteomics Needs Better Chromatography von Shishkova, Evgenia, Hebert, Alexander S., Coon, Joshua J.

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Global mapping of CARM1 substrates defines enzyme specificity and substrate recognition von Shishkova, Evgenia, Zeng, Hao, Liu, Fabao, Kwiecien, Nicholas W., Hebert, Alexander S., Coon, Joshua J., Xu, Wei

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Calorie Restriction and SIRT3 Trigger Global Reprogramming of the Mitochondrial Protein Acetylome von Hebert, Alexander S., Dittenhafer-Reed, Kristin E., Yu, Wei, Bailey, Derek J., Selen, Ebru Selin, Boersma, Melissa D., Carson, Joshua J., Tonelli, Marco, Balloon, Allison J., Higbee, Alan J., Westphall, Michael S., Pagliarini, David J., Prolla, Tomas A., Assadi-Porter, Fariba, Roy, Sushmita, Denu, John M., Coon, Joshua J.

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Heterologous expression of a glycosyl hydrolase and cellular reprogramming enable Zymomonas mobilis growth on cellobiose von Kurumbang, Nagendra P, Vera, Jessica M, Hebert, Alexander S, Coon, Joshua J, Landick, Robert

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Multi-Omic Single-Shot Technology for Integrated Proteome and Lipidome Analysis von He, Yuchen, Rashan, Edrees H, Linke, Vanessa, Shishkova, Evgenia, Hebert, Alexander S, Jochem, Adam, Westphall, Michael S, Pagliarini, David J, Overmyer, Katherine A, Coon, Joshua J

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Improved Precursor Characterization for Data-Dependent Mass Spectrometry von Hebert, Alexander S, Thöing, Christian, Riley, Nicholas M, Kwiecien, Nicholas W, Shiskova, Evgenia, Huguet, Romain, Cardasis, Helene L, Kuehn, Andreas, Eliuk, Shannon, Zabrouskov, Vlad, Westphall, Michael S, McAlister, Graeme C, Coon, Joshua J

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Maximizing Tandem Mass Spectrometry Acquisition Rates for Shotgun Proteomics von Trujillo, Edna A, Hebert, Alexander S, Brademan, Dain R, Coon, Joshua J

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Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae von Sato, Trey K, Tremaine, Mary, Parreiras, Lucas S, Hebert, Alexander S, Myers, Kevin S, Higbee, Alan J, Sardi, Maria, McIlwain, Sean J, Ong, Irene M, Breuer, Rebecca J, Avanasi Narasimhan, Ragothaman, McGee, Mick A, Dickinson, Quinn, La Reau, Alex, Xie, Dan, Tian, Mingyuan, Reed, Jennifer L, Zhang, Yaoping, Coon, Joshua J, Hittinger, Chris Todd, Gasch, Audrey P, Landick, Robert

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Genome Wide Phosphoproteome Analysis of Zymomonas mobilis Under Anaerobic, Aerobic, and N2-Fixing Conditions von Tatli, Mehmet, Hebert, Alexander S., Coon, Joshua J., Amador-Noguez, Daniel

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Islet proteomics reveals genetic variation in dopamine production resulting in altered insulin secretion von Mitok, Kelly A., Freiberger, Elyse C., Schueler, Kathryn L., Rabaglia, Mary E., Stapleton, Donald S., Kwiecien, Nicholas W., Malec, Paige A., Hebert, Alexander S., Broman, Aimee T., Kennedy, Robert T., Keller, Mark P., Coon, Joshua J., Attie, Alan D.

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Protein Composition of Infectious Spores Reveals Novel Sexual Development and Germination Factors in Cryptococcus von Huang, Mingwei, Hebert, Alexander S, Coon, Joshua J, Hull, Christina M

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Valosin-containing protein (VCP)–Adaptor Interactions are Exceptionally Dynamic and Subject to Differential Modulation by a VCP Inhibitor von Xue, Liang, Blythe, Emily E., Freiberger, Elyse C., Mamrosh, Jennifer L., Hebert, Alexander S., Reitsma, Justin M., Hess, Sonja, Coon, Joshua J., Deshaies, Raymond J.

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NeuCode Proteomics Reveals Bap1 Regulation of Metabolism von Baughman, Joshua M., Rose, Christopher M., Kolumam, Ganesh, Webster, Joshua D., Wilkerson, Emily M., Merrill, Anna E., Rhoads, Timothy W., Noubade, Rajkumar, Katavolos, Paula, Lesch, Justin, Stapleton, Donald S., Rabaglia, Mary E., Schueler, Kathy L., Asuncion, Raymond, Domeyer, Melanie, Zavala-Solorio, Jose, Reich, Michael, DeVoss, Jason, Keller, Mark P., Attie, Alan D., Hebert, Alexander S., Westphall, Michael S., Coon, Joshua J., Kirkpatrick, Donald S., Dey, Anwesha

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Specificity of Human Thymine DNA Glycosylase Depends on N-Glycosidic Bond Stability von Bennett, Matthew T, Rodgers, M. T, Hebert, Alexander S, Ruslander, Lindsay E, Eisele, Leslie, Drohat, Alexander C

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Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Z... von Zhang, Yaoping, Vera, Jessica M., Xie, Dan, Serate, Jose, Pohlmann, Edward, Russell, Jason D., Hebert, Alexander S., Coon, Joshua J., Sato, Trey K., Landick, Robert

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Proteomics Moves into the Fast Lane von Riley, Nicholas M., Hebert, Alexander S., Coon, Joshua J.

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Erythropoietin signaling regulates heme biosynthesis von Chung, Jacky, Wittig, Johannes G, Ghamari, Alireza, Maeda, Manami, Dailey, Tamara A, Bergonia, Hector, Kafina, Martin D, Coughlin, Emma E, Minogue, Catherine E, Hebert, Alexander S, Li, Liangtao, Kaplan, Jerry, Lodish, Harvey F, Bauer, Daniel E, Orkin, Stuart H, Cantor, Alan B, Maeda, Takahiro, Phillips, John D, Coon, Joshua J, Pagliarini, David J, Dailey, Harry A, Paw, Barry H

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Systematic Analysis of Metabolic Bottlenecks in the Methylerythritol 4-Phosphate (MEP) Pathway of Zymomonas mobilis von Khana, Daven B, Tatli, Mehmet, Rivera Vazquez, Julio, Weraduwage, Sarathi M, Stern, Noah, Hebert, Alexander S, Angelica Trujillo, Edna, Stevenson, David M, Coon, Joshua J, Sharky, Thomas D, Amador-Noguez, Daniel

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