Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri von Kenny, Nathan J., Francis, Warren R., Rivera-Vicéns, Ramón E., Juravel, Ksenia, de Mendoza, Alex, Díez-Vives, Cristina, Lister, Ryan, Bezares-Calderón, Luis A., Grombacher, Lauren, Roller, Maša, Barlow, Lael D., Camilli, Sara, Ryan, Joseph F., Wörheide, Gert, Hill, April L., Riesgo, Ana, Leys, Sally P.

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A mammalian DNA methylation landscape von de Mendoza, Alex

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Evolution of the MAGUK protein gene family in premetazoan lineages von de Mendoza, Alex, Suga, Hiroshi, Ruiz-Trillo, Iñaki

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Origin and evolution of eukaryotic transcription factors von de Mendoza, Alex, Sebé-Pedrós, Arnau

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Towards understanding the origin of animal development von Ruiz-Trillo, Iñaki, de Mendoza, Alex

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Forward genetics for back-in-time questions von de Mendoza, Alex, Ruiz-Trillo, Iñaki

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Sterol and genomic analyses validate the sponge biomarker hypothesis von Gold, David A., Grabenstatter, Jonathan, de Mendoza, Alex, Riesgo, Ana, Ruiz-Trillo, Iñaki, Summons, Roger E.

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Developmental remodelling of non-CG methylation at satellite DNA repeats von Ross, Samuel E, Angeloni, Allegra, Geng, Fan-Suo, de Mendoza, Alex, Bogdanovic, Ozren

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Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability von de Mendoza, Alex, Nguyen, Trung Viet, Ford, Ethan, Poppe, Daniel, Buckberry, Sam, Pflueger, Jahnvi, Grimmer, Matthew R., Stolzenburg, Sabine, Bogdanovic, Ozren, Oshlack, Alicia, Farnham, Peggy J., Blancafort, Pilar, Lister, Ryan

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Phylogenomics Reveals Convergent Evolution of Lifestyles in Close Relatives of Animals and Fungi von Torruella, Guifré, de Mendoza, Alex, Grau-Bové, Xavier, Antó, Meritxell, Chaplin, Mark A., del Campo, Javier, Eme, Laura, Pérez-Cordón, Gregorio, Whipps, Christopher M., Nichols, Krista M., Paley, Richard, Roger, Andrew J., Sitjà-Bobadilla, Ariadna, Donachie, Stuart, Ruiz-Trillo, Iñaki

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Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages von Alex de Mendoza, Arnau Sebé-Pedrós, Martin Sebastijan Šestak, Marija Matejčić, Guifré Torruella, Tomislav Domazet-Lošo, Iñaki Ruiz-Trillo

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Enteric neurons increase maternal food intake during reproduction von Hadjieconomou, Dafni, King, George, Gaspar, Pedro, Mineo, Alessandro, Blackie, Laura, Ameku, Tomotsune, Studd, Chris, de Mendoza, Alex, Diao, Fengqiu, White, Benjamin H., Brown, André E. X., Plaçais, Pierre-Yves, Préat, Thomas, Miguel-Aliaga, Irene

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The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity von de Mendoza, Alex, Sebé-Pedrós, Arnau, Ruiz-Trillo, Iñaki

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Transient and Permanent Reconfiguration of Chromatin and Transcription Factor Occupancy Drive Reprogramming von Knaupp, Anja S., Buckberry, Sam, Pflueger, Jahnvi, Lim, Sue Mei, Ford, Ethan, Larcombe, Michael R., Rossello, Fernando J., de Mendoza, Alex, Alaei, Sara, Firas, Jaber, Holmes, Melissa L., Nair, Shalima S., Clark, Susan J., Nefzger, Christian M., Lister, Ryan, Polo, Jose M.

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The emergence of Sox and POU transcription factors predates the origins of animal stem cells von Gao, Ya, Tan, Daisylyn Senna, Girbig, Mathias, Hu, Haoqing, Zhou, Xiaomin, Xie, Qianwen, Yeung, Shi Wing, Lee, Kin Shing, Ho, Sik Yin, Cojocaru, Vlad, Yan, Jian, Hochberg, Georg K. A., de Mendoza, Alex, Jauch, Ralf

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Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals von de Mendoza, Alex, Suga, Hiroshi, Permanyer, Jon, Irimia, Manuel, Ruiz-Trillo, Iñaki

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Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division von Desvoyes, Bénédicte, de Mendoza, Alex, Ruiz-Trillo, Iñaki, Gutierrez, Crisanto

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Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons von de Mendoza, Alex, Bonnet, Amandine, Vargas-Landin, Dulce B., Ji, Nanjing, Li, Hongfei, Yang, Feng, Li, Ling, Hori, Koichi, Pflueger, Jahnvi, Buckberry, Sam, Ohta, Hiroyuki, Rosic, Nedeljka, Lesage, Pascale, Lin, Senjie, Lister, Ryan

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Annelid methylomes reveal ancestral developmental and aging-associated epigenetic erosion across Bilateria von Guynes, Kero, Sarre, Luke A, Carrillo-Baltodano, Allan M, Davies, Billie E, Xu, Lan, Liang, Yan, Martín-Zamora, Francisco M, Hurd, Paul J, de Mendoza, Alex, Martín-Durán, José M

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Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases von Suga, Hiroshi, Dacre, Michael, de Mendoza, Alex, Shalchian-Tabrizi, Kamran, Manning, Gerard, Ruiz-Trillo, Iñaki

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