Precision engineering for PRRSV resistance in pigs: Macrophages from genome edited pigs lacking CD163 SRCR5 domain are fully resistant to both PRRSV genotypes while maintaining bio... von Burkard, Christine, Lillico, Simon G, Reid, Elizabeth, Jackson, Ben, Mileham, Alan J, Ait-Ali, Tahar, Whitelaw, C Bruce A, Archibald, Alan L

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Illuminating the dark side of the human transcriptome with long read transcript sequencing von Kuo, Richard I., Cheng, Yuanyuan, Zhang, Runxuan, Brown, John W. S., Smith, Jacqueline, Archibald, Alan L., Burt, David W.

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A high resolution atlas of gene expression in the domestic sheep (Ovis aries) von Clark, Emily L, Bush, Stephen J, McCulloch, Mary E B, Farquhar, Iseabail L, Young, Rachel, Lefevre, Lucas, Pridans, Clare, Tsang, Hiu G, Wu, Chunlei, Afrasiabi, Cyrus, Watson, Mick, Whitelaw, C Bruce, Freeman, Tom C, Summers, Kim M, Archibald, Alan L, Hume, David A

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Pigs Lacking the Scavenger Receptor Cysteine-Rich Domain 5 of CD163 Are Resistant to Porcine Reproductive and Respiratory Syndrome Virus 1 Infection von Burkard, Christine, Opriessnig, Tanja, Mileham, Alan J, Stadejek, Tomasz, Ait-Ali, Tahar, Lillico, Simon G, Whitelaw, C Bruce A, Archibald, Alan L

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Livestock 2.0 - genome editing for fitter, healthier, and more productive farmed animals von Tait-Burkard, Christine, Doeschl-Wilson, Andrea, McGrew, Mike J, Archibald, Alan L, Sang, Helen M, Houston, Ross D, Whitelaw, C Bruce, Watson, Mick

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A high density recombination map of the pig reveals a correlation between sex-specific recombination and GC content von Tortereau, Flavie, Servin, Bertrand, Frantz, Laurent, Megens, Hendrik-Jan, Milan, Denis, Rohrer, Gary, Wiedmann, Ralph, Beever, Jonathan, Archibald, Alan L, Schook, Lawrence B, Groenen, Martien A M

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Signatures of diversifying selection in European pig breeds von Wilkinson, Samantha, Lu, Zen H, Megens, Hendrik-Jan, Archibald, Alan L, Haley, Chris, Jackson, Ian J, Groenen, Martien A M, Crooijmans, Richard P M A, Ogden, Rob, Wiener, Pamela

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From FAANG to fork: application of highly annotated genomes to improve farmed animal production von Clark, Emily L., Archibald, Alan L., Daetwyler, Hans D., Groenen, Martien A. M., Harrison, Peter W., Houston, Ross D., Kuhn, Christa, Lien, Sigbjorn, Macqueen, Daniel J., Reecy, James M., Robledo, Diego, Watson, Mick, Tuggle, Christopher K., Giuffra, Elisabetta

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Strong signatures of selection in the domestic pig genome von Rubin, Carl-Johan, Megens, Hendrik-Jan, Barrio, Alvaro Martinez, Maqbool, Khurram, Sayyab, Shumaila, Schwochow, Doreen, Wang, Chao, Carlborg, Örjan, Jern, Patric, Jørgensen, Claus B, Archibald, Alan L, Fredholm, Merete, Groenen, Martien A. M, Andersson, Leif

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Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar) von Houston, Ross D, Taggart, John B, Cézard, Timothé, Bekaert, Michaël, Lowe, Natalie R, Downing, Alison, Talbot, Richard, Bishop, Stephen C, Archibald, Alan L, Bron, James E, Penman, David J, Davassi, Alessandro, Brew, Fiona, Tinch, Alan E, Gharbi, Karim, Hamilton, Alastair

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Normalized long read RNA sequencing in chicken reveals transcriptome complexity similar to human von Kuo, Richard I, Tseng, Elizabeth, Eory, Lel, Paton, Ian R, Archibald, Alan L, Burt, David W

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Lawsonia intracellularis exploits β-catenin/Wnt and Notch signalling pathways during infection of intestinal crypt to alter cell homeostasis and promote cell proliferation von Huan, Yang W, Bengtsson, Rebecca J, MacIntyre, Neil, Guthrie, Jack, Finlayson, Heather, Smith, Sionagh H, Archibald, Alan L, Ait-Ali, Tahar

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A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas von Peñaloza, Carolina, Gutierrez, Alejandro P, Eöry, Lél, Wang, Shan, Guo, Ximing, Archibald, Alan L, Bean, Tim P, Houston, Ross D

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Balancing selection at a premature stop mutation in the myostatin gene underlies a recessive leg weakness syndrome in pigs von Matika, Oswald, Robledo, Diego, Pong-Wong, Ricardo, Bishop, Stephen C, Riggio, Valentina, Finlayson, Heather, Lowe, Natalie R, Hoste, Annabelle E, Walling, Grant A, Del-Pozo, Jorge, Archibald, Alan L, Woolliams, John A, Houston, Ross D

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Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication von Dutta, Prasun, Talenti, Andrea, Young, Rachel, Jayaraman, Siddharth, Callaby, Rebecca, Jadhav, Santosh Kumar, Dhanikachalam, Velu, Manikandan, Mayakannan, Biswa, Bhim B., Low, Wai Y., Williams, John L., Cook, Elizabeth, Toye, Phil, Wall, Eileen, Djikeng, Appolinaire, Marshall, Karen, Archibald, Alan L., Gokhale, Suresh, Kumar, Satish, Hume, David A., Prendergast, James G. D.

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A gene expression atlas of the domestic pig von Freeman, Tom C, Ivens, Alasdair, Baillie, J Kenneth, Beraldi, Dario, Barnett, Mark W, Dorward, David, Downing, Alison, Fairbairn, Lynsey, Kapetanovic, Ronan, Raza, Sobia, Tomoiu, Andru, Alberio, Ramiro, Wu, Chunlei, Su, Andrew I, Summers, Kim M, Tuggle, Christopher K, Archibald, Alan L, Hume, David A

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Pig genome sequence--analysis and publication strategy von Archibald, Alan L, Bolund, Lars, Churcher, Carol, Fredholm, Merete, Groenen, Martien A M, Harlizius, Barbara, Lee, Kyung-Tai, Milan, Denis, Rogers, Jane, Rothschild, Max F, Uenishi, Hirohide, Wang, Jun, Schook, Lawrence B

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Comparative analysis of monocyte subsets in the pig von Fairbairn, Lynsey, Kapetanovic, Ronan, Beraldi, Dario, Sester, David P, Tuggle, Chris K, Archibald, Alan L, Hume, David A

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Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project von Andersson, Leif, Archibald, Alan L, Bottema, Cynthia D, Brauning, Rudiger, Burgess, Shane C, Burt, Dave W, Casas, Eduardo, Cheng, Hans H, Clarke, Laura, Couldrey, Christine, Dalrymple, Brian P, Elsik, Christine G, Foissac, Sylvain, Giuffra, Elisabetta, Groenen, Martien A, Hayes, Ben J, Huang, LuSheng S, Khatib, Hassan, Kijas, James W, Kim, Heebal, Lunney, Joan K, McCarthy, Fiona M, McEwan, John C, Moore, Stephen, Nanduri, Bindu, Notredame, Cedric, Palti, Yniv, Plastow, Graham S, Reecy, James M, Rohrer, Gary A, Sarropoulou, Elena, Schmidt, Carl J, Silverstein, Jeffrey, Tellam, Ross L, Tixier-Boichard, Michele, Tosser-Klopp, Gwenola, Tuggle, Christopher K, Vilkki, Johanna, White, Stephen N, Zhao, Shuhong, Zhou, Huaijun

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An improved pig reference genome sequence to enable pig genetics and genomics research von Warr, Amanda, Affara, Nabeel, Aken, Bronwen, Beiki, Hamid, Bickhart, Derek M, Billis, Konstantinos, Chow, William, Eory, Lel, Finlayson, Heather A, Flicek, Paul, Girón, Carlos G, Griffin, Darren K, Hall, Richard, Hannum, Greg, Hourlier, Thibaut, Howe, Kerstin, Hume, David A, Izuogu, Osagie, Kim, Kristi, Koren, Sergey, Liu, Haibou, Manchanda, Nancy, Martin, Fergal J, Nonneman, Dan J, O'Connor, Rebecca E, Phillippy, Adam M, Rohrer, Gary A, Rosen, Benjamin D, Rund, Laurie A, Sargent, Carole A, Schook, Lawrence B, Schroeder, Steven G, Schwartz, Ariel S, Skinner, Ben M, Talbot, Richard, Tseng, Elizabeth, Tuggle, Christopher K, Watson, Mick, Smith, Timothy P L, Archibald, Alan L

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