Advancing functional and translational microbiome research using meta-omics approaches von Zhang, Xu, Li, Leyuan, Butcher, James, Stintzi, Alain, Figeys, Daniel

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Resistant starch, microbiome, and precision modulation von Dobranowski, Peter A., Stintzi, Alain

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Low temperature MBBR nitrification: Microbiome analysis von Young, Bradley, Delatolla, Robert, Kennedy, Kevin, Laflamme, Edith, Stintzi, Alain

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Functional Impacts of the Intestinal Microbiome in the Pathogenesis of Inflammatory Bowel Disease von Li, Jennifer, Butcher, James, Mack, David, Stintzi, Alain

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Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease von Zhang, Xu, Deeke, Shelley A., Ning, Zhibin, Starr, Amanda E., Butcher, James, Li, Jennifer, Mayne, Janice, Cheng, Kai, Liao, Bo, Li, Leyuan, Singleton, Ruth, Mack, David, Stintzi, Alain, Figeys, Daniel

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Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease von Zhang, Xu, Ning, Zhibin, Mayne, Janice, Yang, Yidai, Deeke, Shelley A., Walker, Krystal, Farnsworth, Charles L., Stokes, Matthew P., Couture, Jean-François, Mack, David, Stintzi, Alain, Figeys, Daniel

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Defining the vulnerable period for re-establishment of Clostridium difficile colonization after treatment of C. difficile infection with oral vancomycin or metronidazole von Abujamel, Turki, Cadnum, Jennifer L, Jury, Lucy A, Sunkesula, Venkata C K, Kundrapu, Sirisha, Jump, Robin L, Stintzi, Alain C, Donskey, Curtis J

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Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease von Mottawea, Walid, Chiang, Cheng-Kang, Mühlbauer, Marcus, Starr, Amanda E., Butcher, James, Abujamel, Turki, Deeke, Shelley A., Brandel, Annette, Zhou, Hu, Shokralla, Shadi, Hajibabaei, Mehrdad, Singleton, Ruth, Benchimol, Eric I., Jobin, Christian, Mack, David R., Figeys, Daniel, Stintzi, Alain

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Gene Expression Profile of Campylobacter jejuni in Response to Growth Temperature Variation von Stintzi, Alain

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An in vitro model maintaining taxon-specific functional activities of the gut microbiome von Li, Leyuan, Abou-Samra, Elias, Ning, Zhibin, Zhang, Xu, Mayne, Janice, Wang, Janet, Cheng, Kai, Walker, Krystal, Stintzi, Alain, Figeys, Daniel

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The transcriptional landscape of Campylobacter jejuni under iron replete and iron limited growth conditions von Butcher, James, Stintzi, Alain

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Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota von Arthur, Janelle C., Perez-Chanona, Ernesto, Mühlbauer, Marcus, Tomkovich, Sarah, Uronis, Joshua M., Fan, Ting-Jia, Campbell, Barry J., Abujamel, Turki, Dogan, Belgin, Rogers, Arlin B., Rhodes, Jonathan M., Stintzi, Alain, Simpson, Kenneth W., Hansen, Jonathan J., Keku, Temitope O., Fodor, Anthony A., Jobin, Christian

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RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs von Li, Leyuan, Ning, Zhibin, Zhang, Xu, Mayne, Janice, Cheng, Kai, Stintzi, Alain, Figeys, Daniel

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Blenderized Enteral Nutrition Diet Study: Feasibility, Clinical, and Microbiome Outcomes of Providing Blenderized Feeds Through a Gastric Tube in a Medically Complex Pediatric Popu... von Gallagher, Kelsey, Flint, Annika, Mouzaki, Marialena, Carpenter, Andrea, Haliburton, Beth, Bannister, Louise, Norgrove, Holly, Hoffman, Lisa, Mack, David, Stintzi, Alain, Marcon, Margaret

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MetaLab: an automated pipeline for metaproteomic data analysis von Cheng, Kai, Ning, Zhibin, Zhang, Xu, Li, Leyuan, Liao, Bo, Mayne, Janice, Stintzi, Alain, Figeys, Daniel

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The mucosal–luminal interface: an ideal sample to study the mucosa-associated microbiota and the intestinal microbial biogeography von Mottawea, Walid, Butcher, James, Li, Jennifer, Abujamel, Turki, Manoogian, Juliana, Mack, David, Stintzi, Alain

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L-Fucose utilization provides Campylobacter jejuni with a competitive advantage von Stahl, Martin, Friis, Lorna M., Nothaft, Harald, Liu, Xin, Li, Jianjun, Szymanski, Christine M., Stintzi, Alain, Cossart, Pascale

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Meso and micro-scale response of post carbon removal nitrifying MBBR biofilm across carrier type and loading von Young, Bradley, Banihashemi, Bahman, Forrest, Daina, Kennedy, Kevin, Stintzi, Alain, Delatolla, Robert

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Virome Sequencing of the Human Intestinal Mucosal-Luminal Interface von Yan, Austin, Butcher, James, Mack, David, Stintzi, Alain

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Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics von Li, Leyuan, Wang, Tong, Ning, Zhibin, Zhang, Xu, Butcher, James, Serrana, Joeselle M., Simopoulos, Caitlin M. A., Mayne, Janice, Stintzi, Alain, Mack, David R., Liu, Yang-Yu, Figeys, Daniel

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