Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions von Andersson, Alma, Larsson, Ludvig, Stenbeck, Linnea, Salmén, Fredrik, Ehinger, Anna, Wu, Sunny Z., Al-Eryani, Ghamdan, Roden, Daniel, Swarbrick, Alex, Borg, Åke, Frisén, Jonas, Engblom, Camilla, Lundeberg, Joakim

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Stromal cell diversity associated with immune evasion in human triple‐negative breast cancer von Wu, Sunny Z, Roden, Daniel L, Wang, Chenfei, Holliday, Holly, Harvey, Kate, Cazet, Aurélie S, Murphy, Kendelle J, Pereira, Brooke, Al‐Eryani, Ghamdan, Bartonicek, Nenad, Hou, Rui, Torpy, James R, Junankar, Simon, Chan, Chia‐Ling, Lam, Chuan En, Hui, Mun N, Gluch, Laurence, Beith, Jane, Parker, Andrew, Robbins, Elizabeth, Segara, Davendra, Mak, Cindy, Cooper, Caroline, Warrier, Sanjay, Forrest, Alistair, Powell, Joseph, O'Toole, Sandra, Cox, Thomas R, Timpson, Paul, Lim, Elgene, Liu, X Shirley, Swarbrick, Alexander

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Cross-tissue single-cell landscape of human monocytes and macrophages in health and disease von Mulder, Kevin, Patel, Amit Ashok, Kong, Wan Ting, Piot, Cécile, Halitzki, Evelyn, Dunsmore, Garett, Khalilnezhad, Shabnam, Irac, Sergio Erdal, Dubuisson, Agathe, Chevrier, Marion, Zhang, Xiao Meng, Tam, John Kit Chung, Lim, Tony Kiat Hon, Wong, Regina Men Men, Pai, Rhea, Khalil, Ahmed Ibrahim Samir, Chow, Pierce Kah Hoe, Wu, Suny Z., Al-Eryani, Ghamdan, Roden, Daniel, Swarbrick, Alexander, Chan, Jerry Kok Yen, Albani, Salvatore, Derosa, Lisa, Zitvogel, Laurence, Sharma, Ankur, Chen, Jinmiao, Silvin, Aymeric, Bertoletti, Antonio, Blériot, Camille, Dutertre, Charles-Antoine, Ginhoux, Florent

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High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes von Singh, Mandeep, Al-Eryani, Ghamdan, Carswell, Shaun, Ferguson, James M., Blackburn, James, Barton, Kirston, Roden, Daniel, Luciani, Fabio, Giang Phan, Tri, Junankar, Simon, Jackson, Katherine, Goodnow, Christopher C., Smith, Martin A., Swarbrick, Alexander

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Performance of tumour microenvironment deconvolution methods in breast cancer using single-cell simulated bulk mixtures von Tran, Khoa A., Addala, Venkateswar, Johnston, Rebecca L., Lovell, David, Bradley, Andrew, Koufariotis, Lambros T., Wood, Scott, Wu, Sunny Z., Roden, Daniel, Al-Eryani, Ghamdan, Swarbrick, Alexander, Williams, Elizabeth D., Pearson, John V., Kondrashova, Olga, Waddell, Nicola

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DNA barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and immunotherapy response von Baldwin, Louise A., Bartonicek, Nenad, Yang, Jessica, Wu, Sunny Z., Deng, Niantao, Roden, Daniel L., Chan, Chia-Ling, Al-Eryani, Ghamdan, Zanker, Damien J., Parker, Belinda S., Swarbrick, Alexander, Junankar, Simon

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Cryopreservation of human cancers conserves tumour heterogeneity for single-cell multi-omics analysis von Wu, Sunny Z., Roden, Daniel L., Al-Eryani, Ghamdan, Bartonicek, Nenad, Harvey, Kate, Cazet, Aurelie S., Chan, Chia-Ling, Junankar, Simon, Hui, Mun N., Millar, Ewan A., Beretov, Julia, Horvath, Lisa, Joshua, Anthony M., Stricker, Phillip, Wilmott, James S., Quek, Camelia, Long, Georgina, Scolyer, Richard A., Yeung, Bertrand Z., Segara, Davendra, Mak, Cindy, Warrier, Sanjay, Powell, Joseph E., O'Toole, Sandra, Lim, Elgene, Swarbrick, Alexander

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snPATHO-seq, a versatile FFPE single-nucleus RNA sequencing method to unlock pathology archives von Wang, Taopeng, Roach, Michael J., Harvey, Kate, Morlanes, Javier Escudero, Kiedik, Beata, Al-Eryani, Ghamdan, Greenwald, Alissa, Kalavros, Nikolaos, Dezem, Felipe Segato, Ma, Yuling, Pita-Juarez, Yered H., Wise, Kellie, Degletagne, Cyril, Elz, Anna, Hadadianpour, Azi, Johanneson, Jack, Pakiam, Fiona, Ryu, Heeju, Newell, Evan W., Tonon, Laurie, Kohlway, Andrew, Drennon, Tingsheng, Abousoud, Jawad, Stott, Ryan, Lund, Paul, Durruthy, Jens, Vallejo, Andres F., Li, Wenyan, Salomon, Robert, Kaczorowski, Dominik, Warren, Joanna, Butler, Lisa M., O’Toole, Sandra, Plummer, Jasmine, Vlachos, Ioannis S., Lundeberg, Joakim, Swarbrick, Alexander, Martelotto, Luciano G.

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Spatial maps of genetically diverse breast cancer cells von Al-Eryani, Ghamdan, Swarbrick, Alexander

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Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants von Bommireddipalli, Shobhana, Ades, Lesley, Archibald, Alison D., Berman, Yemima, Bojadzieva, Jasmina, Brown, Natasha J., Bryen, Samantha J., Engel, Amanda, Ewans, Lisa J., Fennell, Andrew, Freckmann, Mary-Louise, Gear, Russell, Goel, Himanshu, Goh, Shuxiang, Harraway, James, Higgins, Megan, Ho, Gladys, Hunter, Matthew F., Joshi, Himanshu, Krzesinski, Emma, Leventer, Richard J., Macaskill, Steven, McCarthy, Hugh J., McLean, Alison, Patel, Chirag, Regan, Matthew, Schindler, Tim, Tantsis, Esther, Tchan, Michel C., van Spaendonck-Zwarts, Karin, White, Susan M., Williams, Mark G., Wright, Dale C., Yap, Patrick, Yeung, Alison, Jones, Kristi J., Cooper, Sandra T., Arts, Peer, Barnett, Christopher, Beshay, Victoria, Blombery, Piers, Boggs, Kirsten, Branford, Susan, Bryen, Samantha J., Canson, Daffodil, Chew, Edward, Chong, Belinda, Chung, Seo-Kyung, Clark, Mike, Compton, Alison, Corbett, Mark, Davis, Mark R., Dudding, Tracy, Ewans, Lisa J., Eyras, Eduardo, Fellowes, Andrew, Field, Michael, Freckmann, Mary-Louise, Gaff, Clara, Galea, Melanie, Hanna, Bernadette, Harraway, James, Hayashi, Rippei, Henderson, Alex, Jackson, Matilda, Jones, Kristi J., Wong, Justin Jong-Leong, Joshi, Himanshu, Krzesinski, Emma, Kumble, Smitha, Laing, Nigel, Lau, Chiyan, Lee, Eric, Lundie, Ben, Mallawaarachchi, Amali, McLean, Alison, Meldrum, Cliff, Mina, Kym, Mowat, David, Oshlack, Alicia, Parsons, Michael, Patel, Chirag, Pinner, Jason R., Quinn, Michael, Ravenscroft, Gina, Regan, Matthew, Ronan, Anne, Sadedin, Simon, Schreiber, Andreas, Scott, Rodney, Simons, Cas, Smyth, Renee, Thompson, Bryony A., Thorburn, David, Trent, Ronald, Tudini, Emma, Wallis, Mathew, Wilson, Meredith J., Winship, Ingrid, Yeung, Alison

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A single-cell and spatially resolved atlas of human breast cancers von Wu, Sunny Z., Al-Eryani, Ghamdan, Roden, Daniel Lee, Junankar, Simon, Harvey, Kate, Andersson, Alma, Thennavan, Aatish, Wang, Chenfei, Torpy, James R., Bartonicek, Nenad, Wang, Taopeng, Larsson, Ludvig, Kaczorowski, Dominik, Weisenfeld, Neil I., Uytingco, Cedric R., Chew, Jennifer G., Bent, Zachary W., Chan, Chia-Ling, Gnanasambandapillai, Vikkitharan, Dutertre, Charles-Antoine, Gluch, Laurence, Hui, Mun N., Beith, Jane, Parker, Andrew, Robbins, Elizabeth, Segara, Davendra, Cooper, Caroline, Mak, Cindy, Chan, Belinda, Warrier, Sanjay, Ginhoux, Florent, Millar, Ewan, Powell, Joseph E., Williams, Stephen R., Liu, X. Shirley, O’Toole, Sandra, Lim, Elgene, Lundeberg, Joakim, Perou, Charles M., Swarbrick, Alexander

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Reversal of Lactate and PD-1-mediated Macrophage Immunosuppression Controls Growth of PTEN/p53-deficient Prostate Cancer von Chaudagar, Kiranj, Hieromnimon, Hanna M, Khurana, Rimpi, Labadie, Brian, Hirz, Taghreed, Mei, Shenglin, Hasan, Raisa, Shafran, Jordan, Kelley, Anne, Apostolov, Eva, Al-Eryani, Ghamdan, Harvey, Kate, Rameshbabu, Srikrishnan, Loyd, Mayme, Bynoe, Kaela, Drovetsky, Catherine, Solanki, Ani, Markiewicz, Erica, Zamora, Marta, Fan, Xiaobing, Schürer, Stephan, Swarbrick, Alex, Sykes, David B, Patnaik, Akash

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Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions von Andersson, Alma, Larsson, Ludvig, Stenbeck, Linnea, Salmén, Fredrik, Ehinger, Anna, Wu, Sunny Z, Al-Eryani, Ghamdan, Roden, Daniel, Swarbrick, Alex, Borg, Åke, Frisén, Jonas, Engblom, Camilla, Lundeberg, Joakim

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STAT3 gain-of-function mutations connect leukemia with autoimmune disease by pathological NKG2Dhi CD8+ T cell dysregulation and accumulation von Masle-Farquhar, Etienne, Jackson, Katherine J.L., Peters, Timothy J., Al-Eryani, Ghamdan, Singh, Mandeep, Payne, Kathryn J., Rao, Geetha, Avery, Danielle T., Apps, Gabrielle, Kingham, Jennifer, Jara, Christopher J., Skvortsova, Ksenia, Swarbrick, Alexander, Ma, Cindy S., Suan, Daniel, Uzel, Gulbu, Chua, Ignatius, Leiding, Jennifer W., Heiskanen, Kaarina, Preece, Kahn, Kainulainen, Leena, O’Sullivan, Michael, Cooper, Megan A., Seppänen, Mikko R.J., Mustjoki, Satu, Brothers, Shannon, Vogel, Tiphanie P., Brink, Robert, Tangye, Stuart G., Reed, Joanne H., Goodnow, Christopher C.

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Abstract P1-04-04: Dna barcoding reveals ongoing immunoediting of clonal cancer populations during metastatic progression and in response to immunotherapy von Baldwin, Louise A, Bartonicek, Nenad, Yang, Jessica, Wu, Sunny Z, Deng, Niantao, Roden, Daniel, Chan, Chia-Ling, Al-Eryani, Ghamdan, Zanker, Damien J, Parker, Belinda S, Swarbrick, Alexander, Junankar, Simon

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The effects of germline STAT3-activating mutations from autoimmunity and lymphoid malignancy on mouse and human T cells von Masle-Farquhar, Etienne, Payne, Kathryn, Singh, Mandeep, Rao, Geetha, Al-Eryani, Ghamdan, Jara, Christopher, Jackson, Katherine, Brink, Robert Adrian, Tangye, Stuart, Reed, Joanne, Goodnow, Christopher C

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An integrated multi-omic cellular atlas of human breast cancers von Wu, Sunny Z., Roden, Daniel, Al Eryani, Ghamdan, Junankar, Simon, Lim, Elgene, Thennavan, Aatish, Andersson, Alma, Williams, Stephen, Gong, Jingjing, Fropf, Robin, Fuhrman, Kit, Lundeberg, Joakim, Perou, Chuck, Swarbrick, Alexander

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Using single cell genomics to change the treatment of lung cancer von Chin, Venessa T., Al Eryani, Ghamdan, McCloy, Rachael, Stone, Emily, Havryk, Adrian, Plit, Marshall, Field, Andrew, Watkins, Neil, Swarbrick, Alex, Powell, Joseph

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Abstract 2761: CODEX highly multiplex image mapping to CITEseq datasets reveal the spatial dynamics of the TME during the development of acquired resistant in immunotherapy treated... von Quek, Camelia, Silva, Ines P., Al-Eryani, Ghamdan, Mayer, Aaron, Bartonicek, Nenad, Harvey, Kate, Buckley, Chi, Braubach, Oliver, Thompson, John F., Stretch, Jonathan R., Saw, Robyn P M, Shannon, Kerwin F., Menzies, Alexander M., Scolyer, Richard A., Long, Georgina V., Swarbrick, Alexander, Wilmott, James S.

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Single-cell spatial multiomics reveals tumor microenvironment vulnerabilities in cancer resistance to immunotherapy von Quek, Camelia, Pratapa, Aditya, Bai, Xinyu, Al-Eryani, Ghamdan, Pires da Silva, Inês, Mayer, Aaron, Bartonicek, Nenad, Harvey, Kate, Maher, Nigel G., Conway, Jordan W., Kasalo, Rebecca J., Ben Cheikh, Bassem, Braubach, Oliver, Palendira, Umaimainthan, Saw, Robyn P.M., Stretch, Jonathan R., Shannon, Kerwin F., Menzies, Alexander M., Scolyer, Richard A., Long, Georgina V., Swarbrick, Alexander, Wilmott, James S.

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