Maximum antigen diversification in a lyme bacterial population and evolutionary strategies to overcome pathogen diversity von Di, Lia, Akther, Saymon, Bezrucenkovas, Edgaras, Ivanova, Larisa, Sulkow, Brian, Wu, Bing, Mneimneh, Saad, Gomes-Solecki, Maria, Qiu, Wei-Gang

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Primordial origin and diversification of plasmids in Lyme disease agent bacteria von Casjens, Sherwood R, Di, Lia, Akther, Saymon, Mongodin, Emmanuel F, Luft, Benjamin J, Schutzer, Steven E, Fraser, Claire M, Qiu, Wei-Gang

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Evolution of the vls Antigenic Variability Locus of the Lyme Disease Pathogen and Development of Recombinant Monoclonal Antibodies Targeting Conserved VlsE Epitopes von Li, Li, Di, Lia, Akther, Saymon, Zeglis, Brian M, Qiu, Weigang

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Natural selection and recombination at host-interacting lipoprotein loci drive genome diversification of Lyme disease and related bacteria von Akther, Saymon, Mongodin, Emmanuel F, Morgan, Richard D, Di, Lia, Yang, Xiaohua, Golovchenko, Maryna, Rudenko, Natalie, Margos, Gabriele, Hepner, Sabrina, Fingerle, Volker, Kawabata, Hiroki, Norte, Ana Cláudia, de Carvalho, Isabel Lopes, Núncio, Maria Sofia, Marques, Adriana, Schutzer, Steven E, Fraser, Claire M, Luft, Benjamin J, Casjens, Sherwood R, Qiu, Weigang

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BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines von Hernández, Yözen, Bernstein, Rocky, Pagan, Pedro, Vargas, Levy, McCaig, William, Ramrattan, Girish, Akther, Saymon, Larracuente, Amanda, Di, Lia, Vieira, Filipe G, Qiu, Wei-Gang

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Notes from the Field: Epidemiologic Characteristics of SARS-CoV-2 Recombinant Variant XBB.1.5 - New York City, November 1, 2022-January 4, 2023 von Luoma, Elizabeth, Rohrer, Rebecca, Parton, Hilary, Hughes, Scott, Omoregie, Enoma, Taki, Faten, Wang, Jade C, Akther, Saymon, Amin, Helly, Chang, Carolyn, Cheng, Iris, Di Lonardo, Steve, Eddy, Meredith, Firestein, Lauren, Li, Wenhui, Su, Michelle, Lee, Ellen H

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Genotyping and Quantifying Lyme Pathogen Strains by Deep Sequencing of the Outer Surface Protein C ( ospC ) Locus von Di, Lia, Wan, Zhenmao, Akther, Saymon, Ying, Chunxiao, Larracuente, Amanda, Li, Li, Di, Chong, Nunez, Roy, Cucura, D Moses, Goddard, Noel L, Krampis, Konstantino, Qiu, Wei-Gang

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BorreliaBase: a phylogeny-centered browser of Borrelia genomes von Di, Lia, Pagan, Pedro E, Packer, Daniel, Martin, Che L, Akther, Saymon, Ramrattan, Girish, Mongodin, Emmanuel F, Fraser, Claire M, Schutzer, Steven E, Luft, Benjamin J, Casjens, Sherwood R, Qiu, Wei-Gang

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Phylogenomic identification of regulatory sequences in bacteria: an analysis of statistical power and an application to Borrelia burgdorferi sensu lato von Martin, Che L, Martin, Che I, Sukarna, Tika Y, Akther, Saymon, Ramrattan, Girish, Pagan, Pedro, Di, Lia, Mongodin, Emmanuel F, Fraser, Claire M, Schutzer, Steven E, Luft, Benjamin J, Casjens, Sherwood R, Qiu, Wei-Gang

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Erratum for Martin et al., Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to Borrelia burgdorferi Sensu Lato von Martin, Che L, Sukarna, Tika Y, Akther, Saymon, Ramrattan, Girish, Pagan, Pedro, Di, Lia, Mongodin, Emmanuel F, Fraser, Claire M, Schutzer, Steven E, Luft, Benjamin J, Casjens, Sherwood R, Qiu, Wei-Gang

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Erratum for Martin et al., Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to Borrelia burgdorferi italic toggl... von Che L. Martin, Tika Y. Sukarna, Saymon Akther, Girish Ramrattan, Pedro Pagan, Lia Di, Emmanuel F. Mongodin, Claire M. Fraser, Steven E. Schutzer, Benjamin J. Luft, Sherwood R. Casjens, Wei-Gang Qiu

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Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to Borrelia burgdorferi italic toggle="yes">Sensu Lato /italic von Che I. Martin, Tika Y. Sukarna, Saymon Akther, Girish Ramrattan, Pedro Pagan, Lia Di, Emmanuel F. Mongodin, Claire M. Fraser, Steven E. Schutzer, Benjamin J. Luft, Sherwood R. Casjens, Wei-Gang Qiu

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Epidemiologic Characteristics of SARS-CoV-2 Recombinant Variant XBB.1.5--New York City, November 1, 2022-January 4, 2023 von Luoma, Elizabeth, Rohrer, Rebecca, Parton, Hilary, Hughes, Scott, Omoregie, Enoma, Taki, Faten, Wang, Jade C, Akther, Saymon, Amin, Helly, Chang, Carolyn, Cheng, Iris, Lonardo, Steve Di, Eddy, Meredith, Firestein, Lauren, Li, Wenhui, Su, Michelle, Lee, Ellen H

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