An Integrated Metabolic Atlas of Clear Cell Renal Cell Carcinoma von Hakimi, A. Ari, Reznik, Ed, Lee, Chung-Han, Creighton, Chad J., Brannon, A. Rose, Luna, Augustin, Aksoy, B. Arman, Liu, Eric Minwei, Shen, Ronglai, Lee, William, Chen, Yang, Stirdivant, Steve M., Russo, Paul, Chen, Ying-Bei, Tickoo, Satish K., Reuter, Victor E., Cheng, Emily H., Sander, Chris, Hsieh, James J.

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pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data von Vanderkam, Dan, Aksoy, B Arman, Hodes, Isaac, Perrone, Jaclyn, Hammerbacher, Jeff

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Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer von O'Donnell, Timothy, Christie, Elizabeth L, Ahuja, Arun, Buros, Jacqueline, Aksoy, B Arman, Bowtell, David D L, Snyder, Alexandra, Hammerbacher, Jeff

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Mutations in an Innate Immunity Pathway Are Associated with Poor Overall Survival Outcomes and Hypoxic Signaling in Cancer von Olcina, Monica M., Balanis, Nikolas G., Kim, Ryan K., Aksoy, B. Arman, Kodysh, Julia, Thompson, Michael J., Hammerbacher, Jeff, Graeber, Thomas G., Giaccia, Amato J.

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Genomic Classification of Cutaneous Melanoma von Aksoy, B. Arman, Amin, Samirkumar B., Bartlett, John, Behera, Madhusmita, Bernard, Brady, Boice, Lori, Brzezinski, Jakub, Cappellini, Giancarlo Antonini, Chevalier, Aaron, Cho, Juok, Cho, Raymond J., Chudamani, Sudha, Clarke, Amanda, Coons, Stephen, Cope, Leslie, Davidsen, Tanja, Davies, Michael A., Delman, Keith A., Dhalla, Noreen, Dubina, Michael, Ebrom, J. Stephen, Eley, Greg, Gao, Jianjiong, Gardner, Johanna, Garraway, Levi A., Gastier-Foster, Julie M., Gaudioso, Carmelo, Getz, Gad, Gomez-Fernandez, Carmen, Hadjipanayis, Angela, Halaban, Ruth, Hayes, D. Neil, Hoadley, Katherine A., Huang, Mei, Jones, Steven J.M., Ju, Zhenlin, Kim, Jaegil, Kirkwood, John M., Krauthammer, Michael, Kwong, Lawrence N., Ladanyi, Marc, Łaźniak, Radoslaw, Lee, Darlene, Liu, Jia, Liu, Wenbin, Long, Georgina V., Ma, Singer, Manikhas, Georgy M., Mann, Graham J., Mayo, Michael, Mehrabi, Sousan, Meng, Shaowu, Meyerson, Matthew, Mieczkowski, Piotr A., Miller, Martin L., Moschos, Stergios, Murawa, Dawid, Ozenberger, Bradley A., Parfitt, Jeremy, Perou, Charles M., Pihl, Todd D., Quinn, Michael J., Radenbaugh, Amie, Ramirez, Nilsa C., Ramirez, Ricardo, Ren, Xiaojia, Reynolds, Sheila M., Robertson, A. Gordon, Roszik, Jason, Saller, Charles, Santoso, Netty, Schein, Jacqueline E., Scolyer, Richard A., Sekhar, Pedamallu Chandra, Shannon, Kerwin F., Sharpless, Norman E., Shelton, Candace, Sheth, Margi, Shi, Yan, Sica, Gabriel L., Sofia, Heidi J., Spillane, Andrew J., Stuart, Joshua, Sun, Yichao, Tam, Angela, Veluvolu, Umadevi, Voronina, Olga, Walter, Vonn, Wan, Yunhu, Watson, Ian R., White, Peter, Wilkerson, Matthew D., Wu, Junyuan, Xu, Andrew Wei, Yang, Da, Yang, Liming, Yang, Lixing, Zhang, Hailei, Zhang, Jianhua, Zmuda, Erik

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Integrated Genomic Characterization of Papillary Thyroid Carcinoma von Akbani, Rehan, Aksoy, B. Arman, Ally, Adrian, Balasundaram, Miruna, Bernard, Brady, Beroukhim, Rameen, Black, Aaron D., Bodenheimer, Tom, Bowen, Jay, Bristow, Christopher A., Brookens, Robin, Buda, Elizabeth, Butterfield, Yaron S.N., Carty, Sally E., Chin, Lynda, Chuah, Eric, Cibulskis, Kristian, Clarke, Amanda, Clayman, Gary L., Cope, Leslie, Copland, John A., Davidsen, Tanja, Dhir, Rajiv, Dresdner, Gideon, Eldridge, Jonathan, Eley, Greg, El-Naggar, Adel K., Fisher, Sheila, Garraway, Levi A., Getz, Gad, Gehlenborg, Nils, Gibbs, Richard A., Gomez-Hernandez, Karen, Guin, Ranabir, Harper, Hollie A., Heiman, David I., Herman, James G., Hoadley, Katherine A., Hofree, Matan, Holt, Robert A., Hoyle, Alan P., Huang, Franklin W., Ideker, Trey, Kasaian, Katayoon, Khuri, Fadlo R., Kramer, Roger, Ladanyi, Marc, Lander, Eric, Lawrence, Michael S., Lee, Darlene, Leraas, Kristen M., Ling, Shiyun, Liu, Wenbin, LiVolsi, Virginia A., Ma, Yussanne, Mahadeshwar, Harshad S., Mills, Gordon, Mose, Lisle E., Murray, Bradley A., Noble, Michael S., Owonikoko, Taofeek K., Pantazi, Angeliki, Pedamallu, Chandra Sekhar, Perou, Charles M., Prins, Jan F., Ren, Xiaojia, Reynolds, Sheila M., Robertson, A. Gordon, Rosenberg, Mara W., Rosenthal, Matthew, Schein, Jacqueline E., Seethala, Raja R., Shaw, Kenna R. Mills, Sheth, Margi, Shi, Yan, Sica, Gabriel L., Sipahimalani, Payal, Smallridge, Robert C., Sofia, Heidi J., Stuart, Joshua M., Sumer, S. Onur, Tam, Angela, Tarnuzzer, Roy, Thiessen, Nina, Thorne, Leigh, Thorsson, Vésteinn, Vandin, Fabio, Veluvolu, Umadevi, Vinco, Michelle, Voet, Doug, Weinhold, Nils, Wheeler, David, Wilson, Jocelyn, Williams, Michelle, Xu, Andrew W., Yang, Liming, Yang, Lixing, Zeng, Dong, Zhang, Jiashan (Julia), Zmuda, Erik

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Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas von Brat, Daniel J, Verhaak, Roel G W, Aldape, Kenneth D, Yung, W K Alfred, Salama, Sofie R, Cooper, Lee A D, Rheinbay, Esther, Miller, C Ryan, Vitucci, Mark, Morozova, Olena, Robertson, A Gordon, Noushmehr, Houtan, Laird, Peter W, Cherniack, Andrew D, Akbani, Rehan, Huse, Jason T, Ciriello, Giovanni, Poisson, Laila M, Barnholtz-Sloan, Jill S, Berger, Mitchel S, Brennan, Cameron, Colen, Rivka R, Colman, Howard, Flanders, Adam E, Giannini, Caterina, Grifford, Mia, Iavarone, Antonio, Jain, Rajan, Joseph, Isaac, Kim, Jaegil, Kasaian, Katayoon, Mikkelsen, Tom, Murray, Bradley A, O'Neill, Brian Patrick, Pachter, Lior, Parsons, Donald W, Sougnez, Carrie, Sulman, Erik P, Vandenberg, Scott R, Van Meir, Erwin G, von Deimling, Andreas, Zhang, Hailei, Crain, Daniel, Lau, Kevin, Mallery, David, Morris, Scott, Paulauskis, Joseph, Penny, Robert, Shelton, Troy, Sherman, Mark, Yena, Peggy, Black, Aaron, Bowen, Jay, Dicostanzo, Katie, Gastier-Foster, Julie, Leraas, Kristen M, Lichtenberg, Tara M, Pierson, Christopher R, Ramirez, Nilsa C, Taylor, Cynthia, Weaver, Stephanie, Wise, Lisa, Zmuda, Erik, Davidsen, Tanja, Demchok, John A, Eley, Greg, Ferguson, Martin L, Hutter, Carolyn M, Mills Shaw, Kenna R, Ozenberger, Bradley A, Sheth, Margi, Sofia, Heidi J, Tarnuzzer, Roy, Wang, Zhining, Yang, Liming, Zenklusen, Jean Claude, Ayala, Brenda, Baboud, Julien, Chudamani, Sudha, Jensen, Mark A, Liu, Jia, Pihl, Todd, Raman, Rohini, Wan, Yunhu, Wu, Ye, Ally, Adrian, Auman, J Todd, Balasundaram, Miruna, Balu, Saianand, Baylin, Stephen B, Beroukhim, Rameen, Bootwalla, Moiz S, Bowlby, Reanne, Bristow, Christopher A, Brooks, Denise, Butterfield, Yaron, Carlsen, Rebecca, Carter, Scott, Chin, Lynda, Chu, Andy

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Comprehensive molecular characterization of urothelial bladder carcinoma von Weinstein, John N, Akbani, Rehan, Broom, Bradley M, Wang, Wenyi, Verhaak, Roeland G. W, McConkey, David

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Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin von Hoadley, Katherine A., Yau, Christina, Wolf, Denise M., Cherniack, Andrew D., Tamborero, David, Ng, Sam, Leiserson, Max D.M., Niu, Beifang, McLellan, Michael D., Uzunangelov, Vladislav, Zhang, Jiashan, Kandoth, Cyriac, Akbani, Rehan, Shen, Hui, Omberg, Larsson, Chu, Andy, Margolin, Adam A., van’t Veer, Laura J., Lopez-Bigas, Nuria, Laird, Peter W., Raphael, Benjamin J., Ding, Li, Robertson, A. Gordon, Byers, Lauren A., Mills, Gordon B., Weinstein, John N., Van Waes, Carter, Chen, Zhong, Collisson, Eric A., Benz, Christopher C., Perou, Charles M., Stuart, Joshua M.

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The Somatic Genomic Landscape of Glioblastoma von Brennan, Cameron W., Noushmehr, Houtan, Salama, Sofie R., Berman, Samuel H., Beroukhim, Rameen, Wu, Chang-Jiun, Yung, W.K., Sougnez, Carrie, Finocchiaro, Gaetano, O’Neill, Brian P., Myers, Jerome, Weisenberger, Daniel J., Penny, Robert, Marra, Marco, Meyerson, Matthew, Chin, Lynda, Ostrom, Quinn, Wolinsky, Yingli, Black, Keith L., Boulos, Madgy, Brown, Jenn, Czerinski, Christine, Koyfman, Yakov, Rabeno, Brenda, Auman, J.Todd, Lee, Semin, Kalkanis, Steven, Mikkelsen, Tom, Scarpace, Lisa, Reynolds, Sheila, Curley, Erin, Morris, Scott, Yena, Peggy, Cuppini, Lucia, Maderna, Emanuela, Pollo, Bianca, Hoadley, Katherine A., Shi, Yan, Topal, Michael D., Aksoy, B. Arman, Antipin, Yevgeniy, Borsu, Laetitia, Brennan, Cameron W., Gao, Jianjiong, Jacobsen, Anders, Ladanyi, Marc, Lash, Alex, Liang, Yupu, Chen, Qing-Rong, Shaw, Kenna R. Mills, Eckman, John, Eley, Greg, Jensen, Mark A., Kahn, Ari, Pot, David A., Wan, Yunhu, Hansen, Nathan, Hothi, Parvi, Lau, Ching, Cherniack, Andrew D., Noble, Mike, Cibulskis, Kristian, Frazer, Scott, Gabriel, Stacey B., Gehlenborg, Nils, Gentry, Jeff, Heiman, David, Lander, Eric S., Mallard, Will, Meyerson, Matthew, Getz, Gad, Dees, Nathan N., Fulton, Robert S., Kanchi, Krishna-Latha, Devine, Karen, Carlin, Daniel, Ellrott, Kyle, Haussler, David, Ng, Sam, Salama, Sofie R., Waltman, Peter, Zhu, Jing, Frentzen, Barbara, Friedman, William, McTiernan, Raquel, Perou, Charles M., Akbani, Rehan, Aldape, Kenneth, Bogler, Oliver, Fuller, Gregory N., Mills, Gordon, Protopopov, Alexei, Wu, Chang-Jiun, Weinstein, John N., Verhaak, Roel G.W., Noushmehr, Houtan, Triche, Timothy J., Laird, Peter W., VanMeir, Erwin G., Brat, Daniel

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The Cancer Genome Atlas Pan-Cancer analysis project von Weinstein, John N, Collisson, Eric A, Mills, Gordon B, Shaw, Kenna R Mills, Ozenberger, Brad A, Ellrott, Kyle, Shmulevich, Ilya, Sander, Chris, Stuart, Joshua M

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Abstract 4271: The cBioPortal for Cancer Genomics as a clinical decision support tool von Gao, JianJiong, Aksoy, B. Arman, Gross, Benjamin, Dresdner, Gideon, Sun, Yichao, Sumer, S. Onur, Sander, Chris, Schultz, Nikolaus

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Anti-CTLA4 activates intratumoral NK cells and combination with IL15/IL15Rα complexes enhances tumor control von Sanseviero, Emilio, O’Brien, Erin M., Karras, Jenna R., Shabaneh, Tamer B., Aksoy, B. Arman, Xu, Wei, Zheng, Cathy, Yin, Xiangfan, Xu, Xiaowei, Karakousis, Giorgos, Amaravadi, Ravi, Nam, Brian T., Turk, Mary Jo, Hammerbacher, Jeffrey E., Schuchter, Lynn, Mitchell, Tara C., Liu, Qin, Stone, Erica L.

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Mu-wheel von B. Arman Aksoy

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BP_Prior v2.11.0 von B. Arman Aksoy, Demir, Emek, Babur, Özgün, Korkut, Anil

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BP_Prior v2.3.2 von B. Arman Aksoy, Demir, Emek, Babur, Özgün, Korkut, Anil

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BP_Prior v2.9.1 (a.k.a. PERA) von B. Arman Aksoy, Demir, Emek, Babur, Özgün, Korkut, Anil, Sander, Chris

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Open Letter to The American Association for the Advancement of Science von Tennant, Jonathan P., Poisot, Timothée, Kubke, M Fabiana, Michonneau, François, Taylor, Michael P., Steel, Graham, Anquetin, Jérémy, Coyte, Emily, Schwessinger, Benjamin, McKiernan, Erin C., Pollard, Tom, Eckert, Aimee, Allen, Liz, Chawla, Dalmeet Singh, Silva, Elizabeth, Gardner, Nicholas, Cantley, Nathan, Dupuis, John, Pikas, Christina, Buckland, Amy, Teytelman, Lenny, Faulkes, Zen, Gay, Robert J., Brett, Peter T.B., Eklund, Anders, Björk, Johannes, Gunn, William, Desjardins-Proulx, Philippe, Nicholson, Joshua M., Edmunds, Scott, Ray Wilson, Steven, Buck, Stuart, Aksoy, B. Arman, Fatima, Nazeefa, Mounce, Ross, Piwowar, Heather, Thirumalai, Avinash, Priem, Jason, Aldern, Clayton, Hanwell, Marcus D., Marhaver, Kristen L., Roberts, David Michael, Hole, Brian, Grossmann, Alexander, Vaux, David L., Murtagh, John, Carter, Alecia, Holcombe, Alex O., Aleman, Ignacio Torres, Molloy, Sarah, Lamp, John, Todd, Matthew, Seneviratne, Anusha, Guidotti, Guido, McArthur, Joseph, Grohmann, Carlos H., Leeuw, Jan de, Choi, Jung H., Priego, Ernesto, Pasley, Brian, Konkiel, Stacy, Hellen, Elizabeth HB, Levy, Raphael, Coxon, Paul, Pai, Nitika Pant, Carroll, David, Dávila, Jacinto, Herrera-Valdez, Marco Arieli, Alperin, Juan Pablo, de Ruiter, Jan P., Chen, Xianwen, Hatherill, Jeanette, Mullen, Katharine, Bekinschtein, Pedro, Groom, Quentin, Meijer-Kline, Karen, Gatti-Lafranconi, Pietro, Hollister, Jeffrey, Coin, Lachlan, Choi, MooYoung, Patterson-Lomba, Oscar, Ball, Rowena, Swan, Daniel, Curry, Stephen, Noyce, Abigail, Ward, Jordan, Meghreblian, Ben, White, Ethan P., Mulcahy, Sean R., Fausto, Sibele, Barba, Lorena A., Trollope, Ed, Beckett, Stephen, Steen, Andrew D., Sarv, Mari, Ross, Noam, Amir, Erika, Eve, Martin Paul, Cecchi, Franco, Colditz, Jason B.

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Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal von Gao, Jianjiong, Aksoy, Bülent Arman, Dogrusoz, Ugur, Dresdner, Gideon, Gross, Benjamin, Sumer, S Onur, Sun, Yichao, Jacobsen, Anders, Sinha, Rileen, Larsson, Erik, Cerami, Ethan, Sander, Chris, Schultz, Nikolaus

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Perturbation biology nominates upstream-downstream drug combinations in RAF inhibitor resistant melanoma cells von Korkut, Anil, Wang, Weiqing, Demir, Emek, Aksoy, Bülent Arman, Jing, Xiaohong, Molinelli, Evan J, Babur, Özgün, Bemis, Debra L, Onur Sumer, Selcuk, Solit, David B, Pratilas, Christine A, Sander, Chris

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