Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas von Donehower, Lawrence A., Soussi, Thierry, Korkut, Anil, Liu, Yuexin, Schultz, Andre, Cardenas, Maria, Li, Xubin, Babur, Ozgun, Hsu, Teng-Kuei, Lichtarge, Olivier, Weinstein, John N., Akbani, Rehan, Wheeler, David A.

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Explore, Visualize, and Analyze Functional Cancer Proteomic Data Using the Cancer Proteome Atlas von Li, Jun, Akbani, Rehan, Zhao, Wei, Lu, Yiling, Weinstein, John N, Mills, Gordon B, Liang, Han

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TCPA: a resource for cancer functional proteomics data von Li, Jun, Lu, Yiling, Akbani, Rehan, Ju, Zhenlin, Roebuck, Paul L, Liu, Wenbin, Yang, Ji-Yeon, Broom, Bradley M, Verhaak, Roeland G W, Kane, David W, Wakefield, Chris, Weinstein, John N, Mills, Gordon B, Liang, Han

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Invasive Bladder Cancer: Genomic Insights and Therapeutic Promise von Kim, Jaegil, Akbani, Rehan, Creighton, Chad J, Lerner, Seth P, Weinstein, John N, Getz, Gad, Kwiatkowski, David J

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A pan-cancer proteomic perspective on The Cancer Genome Atlas von Akbani, Rehan, Ng, Patrick Kwok Shing, Werner, Henrica M. J., Shahmoradgoli, Maria, Zhang, Fan, Ju, Zhenlin, Liu, Wenbin, Yang, Ji-Yeon, Yoshihara, Kosuke, Li, Jun, Ling, Shiyun, Seviour, Elena G., Ram, Prahlad T., Minna, John D., Diao, Lixia, Tong, Pan, Heymach, John V., Hill, Steven M., Dondelinger, Frank, Städler, Nicolas, Byers, Lauren A., Meric-Bernstam, Funda, Weinstein, John N., Broom, Bradley M., Verhaak, Roeland G. W., Liang, Han, Mukherjee, Sach, Lu, Yiling, Mills, Gordon B.

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Using Reverse-Phase Protein Arrays (RPPAs) as Pharmacodynamic Assays for Functional Proteomics, Biomarker Discovery, and Drug Development in Cancer von Lu, Yiling, MD, Ling, Shiyun, PhD, Hegde, Apurva M., MS, Byers, Lauren A., MD, Coombes, Kevin, PhD, Mills, Gordon B., MD/PhD, Akbani, Rehan, PhD

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Integrated Analysis of TP53 Gene and Pathway Alterations in The Cancer Genome Atlas von Donehower, Lawrence A., Soussi, Thierry, Korkut, Anil, Liu, Yuexin, Schultz, Andre, Cardenas, Maria, Li, Xubin, Babur, Ozgun, Hsu, Teng-Kuei, Lichtarge, Olivier, Weinstein, John N., Akbani, Rehan, Wheeler, David A.

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Realizing the Promise of Reverse Phase Protein Arrays for Clinical, Translational, and Basic Research: A Workshop Report von Akbani, Rehan, Becker, Karl-Friedrich, Carragher, Neil, Goldstein, Ted, de Koning, Leanne, Korf, Ulrike, Liotta, Lance, Mills, Gordon B., Nishizuka, Satoshi S., Pawlak, Michael, Petricoin, Emanuel F., Pollard, Harvey B., Serrels, Bryan, Zhu, Jingchun

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Applying Support Vector Machines to Imbalanced Datasets von Akbani, Rehan, Kwek, Stephen, Japkowicz, Nathalie

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Credentialing Individual Samples for Proteogenomic Analysis von Zhao, Wei, Li, Jun, Akbani, Rehan, Liang, Han, Mills, Gordon B.

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Interactive Clustered Heat Map Builder: An easy web-based tool for creating sophisticated clustered heat maps [version 2; peer review: 2 approved] von Ryan, Michael C, Stucky, Mark, Wakefield, Chris, Melott, James M, Akbani, Rehan, Weinstein, John N, Broom, Bradley M

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TCGASpliceSeq a compendium of alternative mRNA splicing in cancer von Ryan, Michael, Wong, Wing Chung, Brown, Robert, Akbani, Rehan, Su, Xiaoping, Broom, Bradley, Melott, James, Weinstein, John

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A Galaxy Implementation of Next-Generation Clustered Heatmaps for Interactive Exploration of Molecular Profiling Data von Broom, Bradley M, Ryan, Michael C, Brown, Robert E, Ikeda, Futa, Stucky, Mark, Kane, David W, Melott, James, Wakefield, Chris, Casasent, Tod D, Akbani, Rehan, Weinstein, John N

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Personalized Integrated Network Modeling of the Cancer Proteome Atlas von Ha, Min Jin, Banerjee, Sayantan, Akbani, Rehan, Liang, Han, Mills, Gordon B., Do, Kim-Anh, Baladandayuthapani, Veerabhadran

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Development of a robust classifier for quality control of reverse-phase protein arrays von Ju, Zhenlin, Liu, Wenbin, Roebuck, Paul L, Siwak, Doris R, Zhang, Nianxiang, Lu, Yiling, Davies, Michael A, Akbani, Rehan, Weinstein, John N, Mills, Gordon B, Coombes, Kevin R

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Chimeric RNAs reveal putative neoantigen peptides for developing tumor vaccines for breast cancer von Mistretta, Brandon, Rankothgedera, Sakuni, Castillo, Micah, Rao, Mitchell, Holloway, Kimberly, Bhardwaj, Anjana, El Noafal, Maha, Albarracin, Constance, El-Zein, Randa, Rezaei, Hengameh, Su, Xiaoping, Akbani, Rehan, Shao, Xiaoshan M., Czerniecki, Brian J., Karchin, Rachel, Bedrosian, Isabelle, Gunaratne, Preethi H.

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SAMMI: a semi-automated tool for the visualization of metabolic networks von Schultz, Andre, Akbani, Rehan

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TCGASpliceSeq a compendium of alternative mRNA splicing in cancer von Ryan, Michael, Wong, Wing Chung, Brown, Robert, Akbani, Rehan, Su, Xiaoping, Broom, Bradley, Melott, James, Weinstein, John

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Enhancing role-based trust management with a reputation system for MANETs von Akbani, Rehan, Korkmaz, Turgay

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A Comprehensive Comparison of Normalization Methods for Loading Control and Variance Stabilization of Reverse-Phase Protein Array Data von Liu, Wenbin, Ju, Zhenlin, Lu, Yiling, Mills, Gordon B., Akbani, Rehan

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