Pan-viral specificity of IFN-induced genes reveals new roles for cGAS in innate immunity von Schoggins, John W., MacDuff, Donna A., Imanaka, Naoko, Gainey, Maria D., Shrestha, Bimmi, Eitson, Jennifer L., Mar, Katrina B., Richardson, R. Blake, Ratushny, Alexander V., Litvak, Vladimir, Dabelic, Rea, Manicassamy, Balaji, Aitchison, John D., Aderem, Alan, Elliott, Richard M., García-Sastre, Adolfo, Racaniello, Vincent, Snijder, Eric J., Yokoyama, Wayne M., Diamond, Michael S., Virgin, Herbert W., Rice, Charles M.

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Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome von Kusebauch, Ulrike, Campbell, David S., Deutsch, Eric W., Chu, Caroline S., Spicer, Douglas A., Brusniak, Mi-Youn, Slagel, Joseph, Sun, Zhi, Stevens, Jeffrey, Grimes, Barbara, Shteynberg, David, Hoopmann, Michael R., Blattmann, Peter, Ratushny, Alexander V., Rinner, Oliver, Picotti, Paola, Carapito, Christine, Huang, Chung-Ying, Kapousouz, Meghan, Lam, Henry, Tran, Tommy, Demir, Emek, Aitchison, John D., Sander, Chris, Hood, Leroy, Aebersold, Ruedi, Moritz, Robert L.

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A Role for the Nucleoporin Nup170p in Chromatin Structure and Gene Silencing von Van de Vosse, David W., Wan, Yakun, Lapetina, Diego L., Chen, Wei-Ming, Chiang, Jung-Hsien, Aitchison, John D., Wozniak, Richard W.

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Defining the proteolytic landscape during enterovirus infection von Saeed, Mohsan, Kapell, Sebastian, Hertz, Nicholas T., Wu, Xianfang, Bell, Kierstin, Ashbrook, Alison W., Mark, Milica Tesic, Zebroski, Henry A., Neal, Maxwell L., Flodstrom-Tullberg, Malin, MacDonald, Margaret R., Aitchison, John D., Molina, Henrik, Rice, Charles M.

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ESCRT-III is required for scissioning new peroxisomes from the endoplasmic reticulum von Mast, Fred D, Herricks, Thurston, Strehler, Kathleen M, Miller, Leslie R, Saleem, Ramsey A, Rachubinski, Richard A, Aitchison, John D

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Distinct immune responses associated with vaccination status and protection outcomes after malaria challenge von Oyong, Damian A, Duffy, Fergal J, Neal, Maxwell L, Du, Ying, Carnes, Jason, Schwedhelm, Katharine V, Hertoghs, Nina, Jun, Seong-Hwan, Miller, Helen, Aitchison, John D, De Rosa, Stephen C, Newell, Evan W, McElrath, M Juliana, McDermott, Suzanne M, Stuart, Kenneth D

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Low rate of SARS-CoV-2 incident infection identified by weekly screening PCR in a prospective year-long cohort study von Harrington, Whitney E, Yeung, Winnie, Beck, Ingrid A, Mast, Fred D, Houck, John, Styrchak, Sheila, Miller, Leslie R, Li, Song, Haglund, Micaela, Jiang, Yonghou, Armistead, Blair, Wallner, Jackson, Nguyen, Tina, Ko, Daisy, Hardy, Samantha, Oldroyd, Alyssa, Gervassi, Ana, Aitchison, John D, Frenkel, Lisa M

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Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast von Wang, Zhuo, Danziger, Samuel A, Heavner, Benjamin D, Ma, Shuyi, Smith, Jennifer J, Li, Song, Herricks, Thurston, Simeonidis, Evangelos, Baliga, Nitin S, Aitchison, John D, Price, Nathan D

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Systems analysis of immune responses to attenuated P. falciparum malaria sporozoite vaccination reveals excessive inflammatory signatures correlating with impaired immunity von Du, Ying, Hertoghs, Nina, Duffy, Fergal J, Carnes, Jason, McDermott, Suzanne M, Neal, Maxwell L, Schwedhelm, Katharine V, McElrath, M Juliana, De Rosa, Stephen C, Aitchison, John D, Stuart, Kenneth D

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Autophagy as a Mechanism for Adaptive Prediction-Mediated Emergence of Drug Resistance von Nivedita, Nivedita, Aitchison, John D., Baliga, Nitin S.

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Systems-level reconstruction of kinase phosphosignaling networks regulating endothelial barrier integrity using temporal data von Wei, Ling, Aitchison, John D., Kaushansky, Alexis, Mast, Fred D.

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Peroxisomes take shape von Smith, Jennifer J., Aitchison, John D.

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Nanobody repertoire generated against the spike protein of ancestral SARS-CoV-2 remains efficacious against the rapidly evolving virus von Ketaren, Natalia E, Mast, Fred D, Fridy, Peter C, Olivier, Jean Paul, Sanyal, Tanmoy, Sali, Andrej, Chait, Brian T, Rout, Michael P, Aitchison, John D

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NUP-1 Is a large coiled-coil nucleoskeletal protein in trypanosomes with lamin-like functions von DuBois, Kelly N, Alsford, Sam, Holden, Jennifer M, Buisson, Johanna, Swiderski, Michal, Bart, Jean-Mathieu, Ratushny, Alexander V, Wan, Yakun, Bastin, Philippe, Barry, J David, Navarro, Miguel, Horn, David, Aitchison, John D, Rout, Michael P, Field, Mark C

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Comprehensive analysis of diverse ribonucleoprotein complexes von Rout, Michael P, Oeffinger, Marlene, Wei, Karen E, Rogers, Richard, DeGrasse, Jeffrey A, Chait, Brian T, Aitchison, John D

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A systems-level gene regulatory network model for Plasmodium falciparum von Neal, Maxwell L, Wei, Ling, Peterson, Eliza, Arrieta-Ortiz, Mario L, Danziger, Samuel A, Baliga, Nitin S, Kaushansky, Alexis, Aitchison, John D

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Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs von Taverna, Sean D., Ilin, Serge, Rogers, Richard S., Tanny, Jason C., Lavender, Heather, Li, Haitao, Baker, Lindsey, Boyle, John, Blair, Lauren P., Chait, Brian T., Patel, Dinshaw J., Aitchison, John D., Tackett, Alan J., Allis, C. David

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Multiple receptor tyrosine kinases regulate dengue infection of hepatocytes von Bourgeois, Natasha M, Wei, Ling, Ho, Nhi N T, Neal, Maxwell L, Seferos, Denali, Tongogara, Tinotenda, Mast, Fred D, Aitchison, John D, Kaushansky, Alexis

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A Data Integration Methodology for Systems Biology von Daehee Hwang, Rust, Alistair G., Stephen Ramsey, Smith, Jennifer J., Deena M. Leslie, Weston, Andrea D., Pedro de Atauri, Aitchison, John D., Hood, Leroy, Siegel, Andrew F., Bolouri, Hamid

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Faster, Quantitative, and Accurate Precursor Acquisition Independent From Ion Count von Panchaud, Alexandre, Jung, Sunhee, Shaffer, Scott A, Aitchison, John D, Goodlett, David R

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