Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning von Gessulat, Siegfried, Schmidt, Tobias, Zolg, Daniel Paul, Samaras, Patroklos, Schnatbaum, Karsten, Zerweck, Johannes, Knaute, Tobias, Rechenberger, Julia, Delanghe, Bernard, Huhmer, Andreas, Reimer, Ulf, Ehrlich, Hans-Christian, Aiche, Stephan, Kuster, Bernhard, Wilhelm, Mathias

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The target landscape of clinical kinase drugs von Klaeger, Susan, Heinzlmeir, Stephanie, Wilhelm, Mathias, Polzer, Harald, Vick, Binje, Koenig, Paul-Albert, Reinecke, Maria, Ruprecht, Benjamin, Petzoldt, Svenja, Meng, Chen, Zecha, Jana, Reiter, Katrin, Qiao, Huichao, Helm, Dominic, Koch, Heiner, Schoof, Melanie, Canevari, Giulia, Casale, Elena, Re Depaolini, Stefania, Feuchtinger, Annette, Wu, Zhixiang, Schmidt, Tobias, Rueckert, Lars, Becker, Wilhelm, Huenges, Jan, Garz, Anne-Kathrin, Gohlke, Bjoern-Oliver, Zolg, Daniel Paul, Kayser, Gian, Vooder, Tonu, Preissner, Robert, Hahne, Hannes, Tõnisson, Neeme, Kramer, Karl, Götze, Katharina, Bassermann, Florian, Schlegl, Judith, Ehrlich, Hans-Christian, Aiche, Stephan, Walch, Axel, Greif, Philipp A., Schneider, Sabine, Felder, Eduard Rudolf, Ruland, Juergen, Médard, Guillaume, Jeremias, Irmela, Spiekermann, Karsten, Kuster, Bernhard

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Building ProteomeTools based on a complete synthetic human proteome von Zolg, Daniel P, Wilhelm, Mathias, Schnatbaum, Karsten, Zerweck, Johannes, Knaute, Tobias, Delanghe, Bernard, Bailey, Derek J, Gessulat, Siegfried, Ehrlich, Hans-Christian, Weininger, Maximilian, Yu, Peng, Schlegl, Judith, Kramer, Karl, Schmidt, Tobias, Kusebauch, Ulrike, Deutsch, Eric W, Aebersold, Ruedi, Moritz, Robert L, Wenschuh, Holger, Moehring, Thomas, Aiche, Stephan, Huhmer, Andreas, Reimer, Ulf, Kuster, Bernhard

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Mechanism of cisplatin proximal tubule toxicity revealed by integrating transcriptomics, proteomics, metabolomics and biokinetics von Wilmes, Anja, Bielow, Chris, Ranninger, Christina, Bellwon, Patricia, Aschauer, Lydia, Limonciel, Alice, Chassaigne, Hubert, Kristl, Theresa, Aiche, Stephan, Huber, Christian G., Guillou, Claude, Hewitt, Philipp, Leonard, Martin O., Dekant, Wolfgang, Bois, Frederic, Jennings, Paul

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Evaluation of drug-induced neurotoxicity based on metabolomics, proteomics and electrical activity measurements in complementary CNS in vitro models von Schultz, Luise, Zurich, Marie-Gabrielle, Culot, Maxime, da Costa, Anaelle, Landry, Christophe, Bellwon, Patricia, Kristl, Theresa, Hörmann, Katrin, Ruzek, Silke, Aiche, Stephan, Reinert, Knut, Bielow, Chris, Gosselet, Fabien, Cecchelli, Romeo, Huber, Christian G., Schroeder, Olaf H.-U., Gramowski-Voss, Alexandra, Weiss, Dieter G., Bal-Price, Anna

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qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments von Walzer, Mathias, Pernas, Lucia Espona, Nasso, Sara, Bittremieux, Wout, Nahnsen, Sven, Kelchtermans, Pieter, Pichler, Peter, van den Toorn, Henk W.P., Staes, An, Vandenbussche, Jonathan, Mazanek, Michael, Taus, Thomas, Scheltema, Richard A., Kelstrup, Christian D., Gatto, Laurent, van Breukelen, Bas, Aiche, Stephan, Valkenborg, Dirk, Laukens, Kris, Lilley, Kathryn S., Olsen, Jesper V., Heck, Albert J.R., Mechtler, Karl, Aebersold, Ruedi, Gevaert, Kris, Vizcaíno, Juan Antonio, Hermjakob, Henning, Kohlbacher, Oliver, Martens, Lennart

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ProteomicsDB von Schmidt, Tobias, Samaras, Patroklos, Frejno, Martin, Gessulat, Siegfried, Barnert, Maximilian, Kienegger, Harald, Krcmar, Helmut, Schlegl, Judith, Ehrlich, Hans-Christian, Aiche, Stephan, Kuster, Bernhard, Wilhelm, Mathias

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ProteomicsDB: a multi-omics and multi-organism resource for life science research von Samaras, Patroklos, Schmidt, Tobias, Frejno, Martin, Gessulat, Siegfried, Reinecke, Maria, Jarzab, Anna, Zecha, Jana, Mergner, Julia, Giansanti, Piero, Ehrlich, Hans-Christian, Aiche, Stephan, Rank, Johannes, Kienegger, Harald, Krcmar, Helmut, Kuster, Bernhard, Wilhelm, Mathias

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Inferring proteolytic processes from mass spectrometry time series data using degradation graphs von Aiche, Stephan, Reinert, Knut, Schütte, Christof, Hildebrand, Diana, Schlüter, Hartmut, Conrad, Tim O F

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OpenMS: a flexible open-source software platform for mass spectrometry data analysis von Röst, Hannes L, Sachsenberg, Timo, Aiche, Stephan, Bielow, Chris, Weisser, Hendrik, Aicheler, Fabian, Andreotti, Sandro, Ehrlich, Hans-Christian, Gutenbrunner, Petra, Kenar, Erhan, Liang, Xiao, Nahnsen, Sven, Nilse, Lars, Pfeuffer, Julianus, Rosenberger, George, Rurik, Marc, Schmitt, Uwe, Veit, Johannes, Walzer, Mathias, Wojnar, David, Wolski, Witold E, Schilling, Oliver, Choudhary, Jyoti S, Malmström, Lars, Aebersold, Ruedi, Reinert, Knut, Kohlbacher, Oliver

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Smart Medical Information Technology for Healthcare (SMITH) von Winter, Alfred, Stäubert, Sebastian, Ammon, Danny, Aiche, Stephan, Beyan, Oya, Bischoff, Verena, Daumke, Philipp, Decker, Stefan, Funkat, Gert, Gewehr, Jan E., de Greiff, Armin, Haferkamp, Silke, Hahn, Udo, Henkel, Andreas, Kirsten, Toralf, Klöss, Thomas, Lippert, Jörg, Löbe, Matthias, Lowitsch, Volker, Maassen, Oliver, Maschmann, Jens, Meister, Sven, Mikolajczyk, Rafael, Nüchter, Matthias, Pletz, Mathias W., Rahm, Erhard, Riedel, Morris, Saleh, Kutaiba, Schuppert, Andreas, Smers, Stefan, Stollenwerk, André, Uhlig, Stefan, Wendt, Thomas, Zenker, Sven, Fleig, Wolfgang, Marx, Gernot, Scherag, André, Löffler, Markus

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MSSimulator: Simulation of Mass Spectrometry Data von Bielow, Chris, Aiche, Stephan, Andreotti, Sandro, Reinert, Knut

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Smart Medical Information Technology for Healthcare (SMITH): Data Integration based on Interoperability Standards von Winter, Alfred, Stäubert, Sebastian, Ammon, Danny, Aiche, Stephan, Beyan, Oya, Bischoff, Verena, Daumke, Philipp, Decker, Stefan, Funkat, Gert, Gewehr, Jan, de Greiff, Armin, Haferkamp, Silke, Hahn, Udo, Henkel, Andreas, Kirsten, Toralf, Klöss, Thomas, Lippert, Jörg, Löbe, Matthias, Lowitsch, Volker, Maassen, Oliver, Maschmann, Jens, Meister, Sven, Mikolajczyk, Rafael, Nüchter, Matthias, Pletz, Mathias, Rahm, Erhard, Riedel, Morris, Saleh, Kutaiba, Schuppert, Andreas, Smers, Stefan, Stollenwerk, André, Uhlig, Stefan, Wendt, Thomas, Zenker, Sven, Fleig, Wolfgang, Marx, Gernot, Scherag, André, Löffler, Markus

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Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry von Aiche, Stephan, Sachsenberg, Timo, Kenar, Erhan, Walzer, Mathias, Wiswedel, Bernd, Kristl, Theresa, Boyles, Matthew, Duschl, Albert, Huber, Christian G., Berthold, Michael R., Reinert, Knut, Kohlbacher, Oliver

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From the desktop to the grid: scalable bioinformatics via workflow conversion von de la Garza, Luis, Veit, Johannes, Szolek, Andras, Röttig, Marc, Aiche, Stephan, Gesing, Sandra, Reinert, Knut, Kohlbacher, Oliver

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OpenMS: a flexible open-source software platform for mass spectrometry data analysis von Röst, Hannes L, Sachsenberg, Timo, Aiche, Stephan, Bielow, Chris, Weisser, Hendrik, Aicheler, Fabian, Andreotti, Sandro, Ehrlich, Hans-Christian, Gutenbrunner, Petra, Kenar, Erhan, Liang, Xiao, Nahnsen, Sven, Nilse, Lars, Pfeuffer, Julianus, Rosenberger, George, Rurik, Marc, Schmitt, Uwe, Veit, Johannes, Walzer, Mathias, Wojnar, David, Wolski, Witold E, Schilling, Oliver, Choudhary, Jyoti S, Malmström, Lars, Aebersold, Ruedi, Reinert, Knut, Kohlbacher, Oliver

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Inferring Proteolytic Processes from Mass Spectrometry Time Series Data von Aiche, Stephan

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qcML: an exchange format for quality control metrics from mass spectrometry experiments von Walzer, Mathias, Pernas, Lucia Espona, Nasso, Sara, Bittremieux, Wout, Nahnsen, Sven, Kelchtermans, Pieter, Pichler, Peter, van den Toorn, Henk W P, Staes, An, Vandenbussche, Jonathan, Mazanek, Michael, Taus, Thomas, Scheltema, R.A, Kelstrup, Christian D, Gatto, Laurent, van Breukelen, Bas, Aiche, Stephan, Valkenborg, Dirk, Laukens, Kris, Lilley, Kathryn S, Olsen, Jesper V, Heck, Albert J R, Mechtler, Karl, Aebersold, Ruedi, Gevaert, Kris, Vizcaíno, Juan Antonio, Hermjakob, Henning, Kohlbacher, Oliver, Martens, Lennart

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From the desktop to the grid von Garza, Luis de la, Veit, Johannes, Szolek, Andras, Roettig, Marc, Aiche, Stephan, Gesing, Sandra, Reinert, Knut, Kohlbacher, Oliver

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Inferring Proteolytic Processes from Mass Spectrometry Time Series Data von Aiche, Stephan

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