Reconstructing cancer genomes from paired-end sequencing data von Oesper, Layla, Ritz, Anna, Aerni, Sarah J, Drebin, Ryan, Raphael, Benjamin J

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Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans von Liu, Xiao, Long, Fuhui, Peng, Hanchuan, Aerni, Sarah J., Jiang, Min, Sánchez-Blanco, Adolfo, Murray, John I., Preston, Elicia, Mericle, Barbara, Batzoglou, Serafim, Myers, Eugene W., Kim, Stuart K.

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Automated cellular annotation for high-resolution images of adult Caenorhabditis elegans von Aerni, Sarah J, Liu, Xiao, Do, Chuong B, Gross, Samuel S, Nguyen, Andy, Guo, Stephen D, Long, Fuhui, Peng, Hanchuan, Kim, Stuart S, Batzoglou, Serafim

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Reconstruction of genealogical relationships with applications to Phase III of HapMap von Kyriazopoulou-Panagiotopoulou, Sofia, Kashef Haghighi, Dorna, Aerni, Sarah J., Sundquist, Andreas, Bercovici, Sivan, Batzoglou, Serafim

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A sequence-based survey of the complex structural organization of tumor genomes von Raphael, Benjamin J, Volik, Stanislav, Yu, Peng, Wu, Chunxiao, Huang, Guiqing, Linardopoulou, Elena V, Trask, Barbara J, Waldman, Frederic, Costello, Joseph, Pienta, Kenneth J, Mills, Gordon B, Bajsarowicz, Krystyna, Kobayashi, Yasuko, Sridharan, Shivaranjani, Paris, Pamela L, Tao, Quanzhou, Aerni, Sarah J, Brown, Raymond P, Bashir, Ali, Gray, Joe W, Cheng, Jan-Fang, de Jong, Pieter, Nefedov, Mikhail, Ried, Thomas, Padilla-Nash, Hesed M, Collins, Colin C

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Computational identification of CDR3 sequence archetypes among immunoglobulin sequences in chronic lymphocytic leukemia von Messmer, Bradley T, Raphael, Benjamin J, Aerni, Sarah J, Widhopf, George F, Rassenti, Laura Z, Gribben, John G, Kay, Neil E, Kipps, Thomas J

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Patterns of Journal Use by Faculty at Three Diverse Universities von King, Donald W., Tenopir, Carol, Montgomery, Carol Hansen, Aerni, Sarah E.

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Reconstructing cancer genomes from paired-end sequencing data von Oesper, Layla, Ritz, Anna, Aerni, Sarah J, Drebin, Ryan, Raphael, Benjamin J

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Framework for multi-tenant data science experiments at-scale von Bergmann, Till Christian, Sedney, Luke, Aerni, Sarah, Kan, Kin Fai

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A Bioinformatic Approach to CLL IGHV Sequence Analysis Identifies Extensive Ig Sequence Archetypes among BothMutated and Unmutated Sequences von Messmer, Bradley T., Raphael, Benjamin J., Aerni, Sarah J., Widhopf, George F., Rassenti, Laura Z., Toy, Traci L., Kipps, Thomas J.

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Automatic determination of alternative paths for a process flow using machine learning von Bergmann, Till Christian, Tselikis, Penny, Aerni, Sarah Joann, Ezbiderli, Mehmet, Weil, Michael, Laraki, Zineb, Teller, Jason, Posse, Christian, Edelstein, Alex

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10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB) von Aerni, Sarah J., Eskin, Eleazar

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Intelligent routing of data objects between paths using machine learning von Bergmann, Till Christian, Aerni, Sarah Joann, Tselikis, Penny, Ezbiderli, Mehmet, Weil, Michael, Laraki, Zineb, Teller, Jason, Posse, Christian, Edelstein, Alex

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Digital drivers in the age of massive datasets von Aerni, Sarah, Farinas, Hulya, Muralidhar, Gautam

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Identification and application of hyperparameters for machine learning von McGuire, Leah, Nabar, Shubha, Moore, Kevin, Wayman, Eric, Gordon, Vitaly, Aerni, Sarah

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Rapid processing of biological sequence data von Aerni Sarah Joann, Micsinai Mariann

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AUTOMATIC DETERMINATION OF ALTERNATIVE PATHS FOR A PROCESS FLOW USING MACHINE LEARNING von Bergmann, Till Christian, Tselikis, Penny, Aerni, Sarah Joann, Ezbiderli, Mehmet, Weil, Michael, Laraki, Zineb, Teller, Jason, Posse, Christian, Edelstein, Alex

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INTELLIGENT ROUTING OF DATA OBJECTS BETWEEN PATHS USING MACHINE LEARNING von Bergmann, Till Christian, Aerni, Sarah Joann, Tselikis, Penny, Ezbiderli, Mehmet, Weil, Michael, Laraki, Zineb, Teller, Jason, Posse, Christian, Edelstein, Alex

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FRAMEWORK FOR MULTI-TENANT DATA SCIENCE EXPERIMENTS AT-SCALE von Bergmann, Till Christian, Sedney, Luke, Aerni, Sarah, Kan, Kin Fai

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IDENTIFICATION AND APPLICATION OF HYPERPARAMETERS FOR MACHINE LEARNING von AERNI, Sarah, GORDON, Vitaly, MOORE, Kevin, WAYMAN, Eric, MCGUIRE, Leah, NABAR, Shubha

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