Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a transcr... von Abdallah, Abdallah M, Weerdenburg, Eveline M, Guan, Qingtian, Ummels, Roy, Borggreve, Stephanie, Adroub, Sabir A, Malas, Tareq B, Naeem, Raeece, Zhang, Huoming, Otto, Thomas D, Bitter, Wilbert, Pain, Arnab

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Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi von Assefa, Samuel, Lim, Caeul, Preston, Mark D, Duffy, Craig W, Nair, Mridul B, Adroub, Sabir A, Kadir, Khamisah A, Goldberg, Jonathan M, Neafsey, Daniel E, Divis, Paul, Clark, Taane G, Duraisingh, Manoj T, Conway, David J, Pain, Arnab, Singh, Balbir

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Comprehensive pan-genome analysis of Mycobacterium marinum: insights into genomic diversity, evolution, and pathogenicity von Zhang, Meng, Adroub, Sabir, Ummels, Roy, Asaad, Mohammed, Song, Lei, Pain, Arnab, Bitter, Wilbert, Guan, Qingtian, Abdallah, Abdallah M.

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Malat-1-PRC2-EZH1 interaction supports adaptive oxidative stress dependent epigenome remodeling in skeletal myotubes von El Said, Nadine Hosny, Della Valle, Francesco, Liu, Peng, Paytuví-Gallart, Andreu, Adroub, Sabir, Gimenez, Juliette, Orlando, Valerio

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Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations von Abdallah, Abdallah M., Hill-Cawthorne, Grant A., Otto, Thomas D., Coll, Francesc, Guerra-Assunção, José Afonso, Gao, Ge, Naeem, Raeece, Ansari, Hifzur, Malas, Tareq B., Adroub, Sabir A., Verboom, Theo, Ummels, Roy, Zhang, Huoming, Panigrahi, Aswini Kumar, McNerney, Ruth, Brosch, Roland, Clark, Taane G., Behr, Marcel A., Bitter, Wilbert, Pain, Arnab

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Transdifferentiation of Mouse Embryonic Fibroblasts into Dopaminergic Neurons Reactivates LINE-1 Repetitive Elements von Della Valle, Francesco, Thimma, Manjula P., Caiazzo, Massimiliano, Pulcrano, Salvatore, Celii, Mirko, Adroub, Sabir A., Liu, Peng, Alanis-Lobato, Gregorio, Broccoli, Vania, Orlando, Valerio

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Comparative Genomic and Transcriptomic Analyses of Mycobacterium kansasii Subtypes Provide New Insights Into Their Pathogenicity and Taxonomy von Guan, Qingtian, Ummels, Roy, Ben-Rached, Fathia, Alzahid, Yara, Amini, Mohammad S., Adroub, Sabir A., van Ingen, Jakko, Bitter, Wilbert, Abdallah, Abdallah M., Pain, Arnab

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Whole genome sequencing provides additional insights into recurrent tuberculosis classified as endogenous reactivation by IS6110 DNA fingerprinting von Dippenaar, Anzaan, De Vos, Margaretha, Marx, Florian M., Adroub, Sabir A., van Helden, Paul D., Pain, Arnab, Sampson, Samantha L., Warren, Robin M.

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Genome-wide transposon mutagenesis indicates that Mycobacterium marinum customizes its virulence mechanisms for survival and replication in different hosts von Weerdenburg, Eveline M, Abdallah, Abdallah M, Rangkuti, Farania, Abd El Ghany, Moataz, Otto, Thomas D, Adroub, Sabir A, Molenaar, Douwe, Ummels, Roy, Ter Veen, Kars, van Stempvoort, Gunny, van der Sar, Astrid M, Ali, Shahjahan, Langridge, Gemma C, Thomson, Nicholas R, Pain, Arnab, Bitter, Wilbert

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Impact of the SARS-CoV-2 nucleocapsid 203K/204R mutations on the inflammatory immune response in COVID-19 severity von Shuaib, Muhammad, Adroub, Sabir, Mourier, Tobias, Mfarrej, Sara, Zhang, Huoming, Esau, Luke, Alsomali, Afrah, Alofi, Fadwa S, Ahmad, Adeel Nazir, Shamsan, Abbas, Khogeer, Asim, Hashem, Anwar M, Almontashiri, Naif A M, Hala, Sharif, Pain, Arnab

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Outcome of Transplant Recipients Infected with Omicron BA.1 and BA.2: A Single-Center Retrospective Study in Saudi Arabia von Alshukairi, Abeer N., Aldabbagh, Yasser, Adroub, Sabir A., Mourier, Tobias, Abumelha, Khalid Y., Albishi, Ghadeer E., Alraddadi, Basem M., Al Hroub, Mohammad K., El-Saed, Aiman, Ibrahim, Suzan M. Nagash, Al Musawa, Mohammed, Almasari, Ahlam, Habahab, Wael T., Alhamlan, Fatimah S., Al-Omari, Awad, Pain, Arnab, Dada, Ashraf

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Complete Genome Sequence of Mycobacterium phlei Type Strain RIVM601174 von Abdallah, Abdallah M, Rashid, Mamoon, Adroub, Sabir A, Arnoux, Marc, Ali, Shahjahan, van Soolingen, Dick, Bitter, Wilbert, Pain, Arnab

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Complete Genome Sequence of Mycobacterium fortuitum subsp. fortuitum Type Strain DSM46621 von Ho, Yung S, Adroub, Sabir A, Aleisa, Fajr, Mahmood, Hanan, Othoum, Ghofran, Rashid, Fahad, Zaher, Manal, Ali, Shahjahan, Bitter, Wilbert, Pain, Arnab, Abdallah, Abdallah M

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Complete Genome Sequence of Mycobacterium vaccae Type Strain ATCC 25954 von Ho, Yung S, Adroub, Sabir A, Abadi, Maram, Al Alwan, Bader, Alkhateeb, Reham, Gao, Ge, Ragab, Alaa, Ali, Shahjahan, van Soolingen, Dick, Bitter, Wilbert, Pain, Arnab, Abdallah, Abdallah M

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Complete Genome Sequence of Mycobacterium xenopi Type Strain RIVM700367 von Abdallah, Abdallah M, Rashid, Mamoon, Adroub, Sabir A, Elabdalaoui, Hafida, Ali, Shahjahan, van Soolingen, Dick, Bitter, Wilbert, Pain, Arnab

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Nuclear AGO1 Regulates Gene Expression by Affecting Chromatin Architecture in Human Cells von Shuaib, Muhammad, Parsi, Krishna Mohan, Thimma, Manjula, Adroub, Sabir Abdu, Kawaji, Hideya, Seridi, Loqmane, Ghosheh, Yanal, Fort, Alexandre, Fallatah, Bodor, Ravasi, Timothy, Carninci, Piero, Orlando, Valerio

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Ago1 controls myogenic differentiation by regulating eRNA-mediated CBP-guided epigenome reprogramming von Fallatah, Bodor, Shuaib, Muhammad, Adroub, Sabir, Paytuvi-Gallart, Andreu, Della Valle, Francesco, Nadeef, Seba, Lanzuolo, Chiara, Orlando, Valerio

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PRC2-EZH1 contributes to circadian gene expression by orchestrating chromatin states and RNA polymerase II complex stability von Liu, Peng, Nadeef, Seba, Serag, Maged F, Paytuví-Gallart, Andreu, Abadi, Maram, Della Valle, Francesco, Radío, Santiago, Roda, Xènia, Dilmé Capó, Jaïr, Adroub, Sabir, Hosny El Said, Nadine, Fallatah, Bodor, Celii, Mirko, Messa, Gian Marco, Wang, Mengge, Li, Mo, Tognini, Paola, Aguilar-Arnal, Lorena, Habuchi, Satoshi, Masri, Selma, Sassone-Corsi, Paolo, Orlando, Valerio

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Progenitor strain introduction of Mycobacterium bovis at the wildlife-livestock interface can lead to clonal expansion of the disease in a single ecosystem von Dippenaar, Anzaan, Parsons, Sven David Charles, Miller, Michele Ann, Hlokwe, Tiny, Gey van Pittius, Nicolaas Claudius, Adroub, Sabir Abdu, Abdallah, Abdallah Musa, Pain, Arnab, Warren, Robin Mark, Michel, Anita Luise, van Helden, Paul David

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Transdifferentiation of Mouse Embryonic Fibroblasts into Dopaminergic Neurons Reactivates LINE-1 Repetitive Elements von Della Valle, Francesco, Thimma, Manjula P, Caiazzo, Massimiliano, Pulcrano, Salvatore, Celii, Mirko, Adroub, Sabir A, Liu, Peng, Alanis-Lobato, Gregorio, Broccoli, Vania, Orlando, Valerio

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