Comprehensive LESA Mass Spectrometry Imaging of Intact Proteins by Integration of Cylindrical FAIMS von Griffiths, Rian L, Hughes, James W, Abbatiello, Susan E, Belford, Michael W, Styles, Iain B, Cooper, Helen J

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Statistical characterization of multiple-reaction monitoring mass spectrometry (MRM-MS) assays for quantitative proteomics von Mani, D R, Abbatiello, Susan E, Carr, Steven A

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Effect of Collision Energy Optimization on the Measurement of Peptides by Selected Reaction Monitoring (SRM) Mass Spectrometry von MacLean, Brendan, Tomazela, Daniela M, Abbatiello, Susan E, Zhang, Shucha, Whiteaker, Jeffrey R, Paulovich, Amanda G, Carr, Steven A, MacCoss, Michael J

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Demonstrating the feasibility of large-scale development of standardized assays to quantify human proteins von Kennedy, Jacob J, Abbatiello, Susan E, Kim, Kyunggon, Yan, Ping, Whiteaker, Jeffrey R, Lin, Chenwei, Kim, Jun Seok, Zhang, Yuzheng, Wang, Xianlong, Ivey, Richard G, Zhao, Lei, Min, Hophil, Lee, Youngju, Yu, Myeong-Hee, Yang, Eun Gyeong, Lee, Cheolju, Wang, Pei, Rodriguez, Henry, Kim, Youngsoo, Carr, Steven A, Paulovich, Amanda G

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Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry von Whiteaker, Jeffrey R., Zhao, Lei, Abbatiello, Susan E., Burgess, Michael, Kuhn, Eric, Lin, ChenWei, Pope, Matthew E., Razavi, Morteza, Anderson, N. Leigh, Pearson, Terry W., Carr, Steven A., Paulovich, Amanda G.

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Improved Sensitivity of Ultralow Flow LC–MS-Based Proteomic Profiling of Limited Samples Using Monolithic Capillary Columns and FAIMS Technology von Greguš, Michal, Kostas, James C, Ray, Somak, Abbatiello, Susan E, Ivanov, Alexander R

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Comprehensive Single-Shot Proteomics with FAIMS on a Hybrid Orbitrap Mass Spectrometer von Hebert, Alexander S, Prasad, Satendra, Belford, Michael W, Bailey, Derek J, McAlister, Graeme C, Abbatiello, Susan E, Huguet, Romain, Wouters, Eloy R, Dunyach, Jean-Jacques, Brademan, Dain R, Westphall, Michael S, Coon, Joshua J

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Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry von Schweppe, Devin K, Prasad, Satendra, Belford, Michael W, Navarrete-Perea, José, Bailey, Derek J, Huguet, Romain, Jedrychowski, Mark P, Rad, Ramin, McAlister, Graeme, Abbatiello, Susan E, Woulters, Eloy R, Zabrouskov, Vlad, Dunyach, Jean-Jacques, Paulo, João A, Gygi, Steven P

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The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells von Melani, Rafael D, Gerbasi, Vincent R, Anderson, Lissa C, Sikora, Jacek W, Toby, Timothy K, Hutton, Josiah E, Butcher, David S, Negrão, Fernanda, Seckler, Henrique S, Srzentić, Kristina, Fornelli, Luca, Camarillo, Jeannie M, LeDuc, Richard D, Cesnik, Anthony J, Lundberg, Emma, Greer, Joseph B, Fellers, Ryan T, Robey, Matthew T, DeHart, Caroline J, Forte, Eleonora, Hendrickson, Christopher L, Abbatiello, Susan E, Thomas, Paul M, Kokaji, Andy I, Levitsky, Josh, Kelleher, Neil L

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Deeper Protein Identification Using Field Asymmetric Ion Mobility Spectrometry in Top-Down Proteomics von Gerbasi, Vincent R, Melani, Rafael D, Abbatiello, Susan E, Belford, Michael W, Huguet, Romain, McGee, John P, Dayhoff, Dawson, Thomas, Paul M, Kelleher, Neil L

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MSstatsQC: Longitudinal System Suitability Monitoring and Quality Control for Targeted Proteomic Experiments von Dogu, Eralp, Mohammad-Taheri, Sara, Abbatiello, Susan E., Bereman, Michael S., MacLean, Brendan, Schilling, Birgit, Vitek, Olga

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Correction to Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry von Schweppe, Devin K, Prasad, Satendra, Belford, Michael W, Navarrete-Perea, Jose, Bailey, Derek J, Huguet, Romain, Jedrychowski, Mark P, Rad, Ramin, McAlister, Graeme, Abbatiello, Susan E, Wouters, Eloy R, Zabrouskov, Vlad, Dunyach, Jean-Jacques, Paulo, João A, Gygi, Steven P

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A framework for installable external tools in Skyline von Broudy, Daniel, Killeen, Trevor, Choi, Meena, Shulman, Nicholas, Mani, Deepak R, Abbatiello, Susan E, Mani, Deepak, Ahmad, Rushdy, Sahu, Alexandria K, Schilling, Birgit, Tamura, Kaipo, Boss, Yuval, Sharma, Vagisha, Gibson, Bradford W, Carr, Steven A, Vitek, Olga, MacCoss, Michael J, MacLean, Brendan

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Efficient expression, purification, and characterization of C-terminally tagged, recombinant human asparagine synthetase von Ciustea, Mihai, Gutierrez, Jemy A., Abbatiello, Susan E., Eyler, John R., Richards, Nigel G.J.

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Mass spectrometric quantification of asparagine synthetase in circulating leukemia cells from acute lymphoblastic leukemia patients von Abbatiello, Susan E., Pan, Yuan-Xiang, Zhou, Mi, Wayne, Alan S., Veenstra, Timothy D., Hunger, Stephen P., Kilberg, Michael S., Eyler, John R., Richards, Nigel G.J., Conrads, Thomas P.

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Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach von Carr, Steven A., Abbatiello, Susan E., Ackermann, Bradley L., Borchers, Christoph, Domon, Bruno, Deutsch, Eric W., Grant, Russell P., Hoofnagle, Andrew N., Hüttenhain, Ruth, Koomen, John M., Liebler, Daniel C., Liu, Tao, MacLean, Brendan, Mani, DR, Mansfield, Elizabeth, Neubert, Hendrik, Paulovich, Amanda G., Reiter, Lukas, Vitek, Olga, Aebersold, Ruedi, Anderson, Leigh, Bethem, Robert, Blonder, Josip, Boja, Emily, Botelho, Julianne, Boyne, Michael, Bradshaw, Ralph A., Burlingame, Alma L., Chan, Daniel, Keshishian, Hasmik, Kuhn, Eric, Kinsinger, Christopher, Lee, Jerry S.H., Lee, Sang-Won, Moritz, Robert, Oses-Prieto, Juan, Rifai, Nader, Ritchie, James, Rodriguez, Henry, Srinivas, Pothur R., Townsend, R. Reid, Van Eyk, Jennifer, Whiteley, Gordon, Wiita, Arun, Weintraub, Susan

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CPTAC Assay Portal: a repository of targeted proteomic assays von Whiteaker, Jeffrey R, Halusa, Goran N, Hoofnagle, Andrew N, Sharma, Vagisha, MacLean, Brendan, Yan, Ping, Wrobel, John A, Kennedy, Jacob, Mani, D R, Zimmerman, Lisa J, Meyer, Matthew R, Mesri, Mehdi, Rodriguez, Henry, Paulovich, Amanda G

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Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma von Abbatiello, Susan E., Schilling, Birgit, Mani, D.R., Zimmerman, Lisa J., Hall, Steven C., MacLean, Brendan, Albertolle, Matthew, Allen, Simon, Burgess, Michael, Cusack, Michael P., Gosh, Mousumi, Hedrick, Victoria, Held, Jason M., Inerowicz, H. Dorota, Jackson, Angela, Keshishian, Hasmik, Kinsinger, Christopher R., Lyssand, John, Makowski, Lee, Mesri, Mehdi, Rodriguez, Henry, Rudnick, Paul, Sadowski, Pawel, Sedransk, Nell, Shaddox, Kent, Skates, Stephen J., Kuhn, Eric, Smith, Derek, Whiteaker, Jeffery R., Whitwell, Corbin, Zhang, Shucha, Borchers, Christoph H., Fisher, Susan J., Gibson, Bradford W., Liebler, Daniel C., MacCoss, Michael J., Neubert, Thomas A., Paulovich, Amanda G., Regnier, Fred E., Tempst, Paul, Carr, Steven A.

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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma von Rudnick, Paul A, Niles, Richard K, Vega-Montoto, Lorenzo J, Mani, D R, Abbatiello, Susan E, Tegeler, Tony J, Tempst, Paul, Gibson, Bradford W, Cusack, Michael P, Buck, Charles, Hall, Steven C, Neubert, Thomas A, Mesri, Mehdi, Tabb, David L, Johansen, Eric B, Ransohoff, David, Addona, Terri A, Bunk, David M, Hiltke, Tara, Zhao, Lei, Schilling, Birgit, Regnier, Fred E, Rodriguez, Henry, Liebler, Daniel C, Wahlander, Åsa, Ham, Amy-Joan L, Dodder, Nathan G, Spiegelman, Clifford H, Carr, Steven A, Li, Jing, Allen, Simon, Variyath, Asokan M, Waldemarson, Sofia, Smith, Derek, Jackson, Angela, Borchers, Christoph H, Anderson, N Leigh, Wang, Mu, Keshishian, Hasmik, Fisher, Susan J, Held, Jason M, Pulsipher, Trenton C, Blackman, Ronald K, Skates, Steven J, Whiteaker, Jeffrey R, Zimmerman, Lisa J, Cardasis, Helene L, Kinsinger, Christopher R, Paulovich, Amanda G

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Characterization and Optimization of Multiplexed Quantitative Analyses Using High-Field Asymmetric-Waveform Ion Mobility Mass Spectrometry (vol 91, pg 4010, 2019) von Schweppe, Devin K., Prasad, Satendra, Belford, Michael W., Navarrete-Perea, Jose, Bailey, Derek J., Huguet, Romain, Jedrychowski, Mark P., Rad, Ramin, McAlister, Graeme, Abbatiello, Susan E., Wouters, Eloy R., Zabrouskov, Vlad, Dunyach, Jean-Jacques, Paulo, Joao A., Gygi, Steven P.

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