HELIOS: High-speed sequence alignment in optics von Maleki, Ehsan, Akbari Rokn Abadi, Saeedeh, Koohi, Somayyeh

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PC-mer: An Ultra-fast memory-efficient tool for metagenomics profiling and classification von Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh

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A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes von Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh

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WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs von Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh

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Optical pattern generator for efficient bio-data encoding in a photonic sequence comparison architecture von Akbari Rokn Abadi, Saeedeh, Hashemi Dijujin, Negin, Koohi, Somayyeh

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KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites von Akbari Rokn Abadi, Saeedeh, Tabatabaei, SeyedehFatemeh, Koohi, Somayyeh

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An accurate alignment-free protein sequence comparator based on physicochemical properties of amino acids von Akbari Rokn Abadi, Saeedeh, Abdosalehi, Azam Sadat, Pouyamehr, Faezeh, Koohi, Somayyeh

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An optimized graph-based structure for single-cell RNA-seq cell-type classification based on non-linear dimension reduction von Abadi, Saeedeh Akbari Rokn, Laghaee, Seyed Pouria, Koohi, Somayyeh

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Exploitation of wavelength, hardware, and path redundancies in fault-tolerant all-optical DCNs von Akbari Rokn Abadi, Saeedeh, Koohi, Somayyeh

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HELIOS: High-speed sequence alignment in optics von Ehsan Maleki, Saeedeh Akbari Rokn Abadi, Somayyeh Koohi

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An automated ultra-fast, memory-efficient, and accurate method for viral genome classification von Abadi, Saeedeh Akbari Rokn, Mohammadi, Amirhossein, Koohi, Somayyeh

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WalkIm: Compact image-based encoding for high-performance classification of biological sequences using simple tuning-free CNNs von Saeedeh Akbari Rokn Abadi, Amirhossein Mohammadi, Somayyeh Koohi

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An Assessment of PC-mer's Performance in Alignment-Free Phylogenetic Tree Construction von Abadi, Saeedeh Akbari Rokn, Honarmand, Melika, Hajialinaghi, Ali, Koohi, Somayyeh

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Additional file 2 of KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites von Akbari Rokn Abadi, Saeedeh, Tabatabaei, SeyedehFatemeh, Koohi, Somayyeh

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Additional file 1 of KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites von Akbari Rokn Abadi, Saeedeh, Tabatabaei, SeyedehFatemeh, Koohi, Somayyeh

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Additional file 5 of KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites von Akbari Rokn Abadi, Saeedeh, Tabatabaei, SeyedehFatemeh, Koohi, Somayyeh

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Additional file 4 of KDeep: a new memory-efficient data extraction method for accurately predicting DNA/RNA transcription factor binding sites von Akbari Rokn Abadi, Saeedeh, Tabatabaei, SeyedehFatemeh, Koohi, Somayyeh

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Additional file 3 of A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes von Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh

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Additional file 2 of A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes von Akbari Rokn Abadi, Saeedeh, Mohammadi, Amirhossein, Koohi, Somayyeh

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An Assessment of PC-mer's Performance in Alignment-Free Phylogenetic Tree Construction von Saeedeh Akbari Rokn Abadi, Honarmand, Melika, Hajialinaghi, Ali, Koohi, Somayyeh

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