High-throughput generation, optimization and analysis of genome-scale metabolic models von Henry, Christopher S, DeJongh, Matthew, Best, Aaron A, Frybarger, Paul M, Linsay, Ben, Stevens, Rick L

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Evaluating the efficacy of point-of-use water filtration units in Fiji von Tintle, Nathan, Heynen, Adam, Van De Griend, Kristin, Ulrich, Rachel, Ojo, Matthew, Boven, Emma, Brokus, Sarah, Wade, Randall, Best, Aaron A

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Predicting variable gene content in Escherichia coli using conserved genes von Nguyen, Marcus, Elmore, Zachary, Ihle, Clay, Moen, Francesco S, Slater, Adam D, Turner, Benjamin N, Parrello, Bruce, Best, Aaron A, Davis, James J

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Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria von Rodionova, Irina A, Li, Xiaoqing, Thiel, Vera, Stolyar, Sergey, Stanton, Krista, Fredrickson, James K, Bryant, Donald A, Osterman, Andrei L, Best, Aaron A, Rodionov, Dmitry A

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Cautions about the reliability of pairwise gene correlations based on expression data von Powers, Scott, DeJongh, Matt, Best, Aaron A, Tintle, Nathan L

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Inference of the Transcriptional Regulatory Network in Staphylococcus aureus by Integration of Experimental and Genomics-Based Evidence von RAVCHEEV, Dmitry A, BEST, Aaron A, TINTLE, Nathan, DEJONGH, Matthew, OSTERMAN, Andrei L, NOVICHKOV, Pavel S, RODIONOV, Dmitry A

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Diversity and Versatility of the Thermotoga maritima Sugar Kinome von Rodionova, Irina A, Yang, Chen, Li, Xiaoqing, Kurnasov, Oleg V, Best, Aaron A, Osterman, Andrei L, Rodionov, Dmitry A

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

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Providing a Safe, In-Person, Residential College Experience During the COVID-19 Pandemic von Travis, Scott A, Best, Aaron A, Bochniak, Kristyn S, Dunteman, Nicole D, Fellinger, Jennifer, Folkert, Peter D, Koberna, Timothy, Kopek, Benjamin G, Krueger, Brent P, Pestun, Jeff, Pikaart, Michael J, Sabo, Cindy, Schuitema, Alex J

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Cluster J mycobacteriophages: intron splicing in capsid and tail genes von Pope, Welkin H, Jacobs-Sera, Deborah, Best, Aaron A, Broussard, Gregory W, Connerly, Pamela L, Dedrick, Rebekah M, Kremer, Timothy A, Offner, Susan, Ogiefo, Amenawon H, Pizzorno, Marie C, Rockenbach, Kate, Russell, Daniel A, Stowe, Emily L, Stukey, Joseph, Thibault, Sarah A, Conway, James F, Hendrix, Roger W, Hatfull, Graham F

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Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data von Tintle, Nathan L, Sitarik, Alexandra, Boerema, Benjamin, Young, Kylie, Best, Aaron A, Dejongh, Matthew

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A Bayesian Framework for the Classification of Microbial Gene Activity States von Disselkoen, Craig, Greco, Brian, Cook, Kaitlyn, Koch, Kristin, Lerebours, Reginald, Viss, Chase, Cape, Joshua, Held, Elizabeth, Ashenafi, Yonatan, Fischer, Karen, Acosta, Allyson, Cunningham, Mark, Best, Aaron A, DeJongh, Matthew, Tintle, Nathan

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Computing and applying atomic regulons to understand gene expression and regulation von Faria, J., Davis, James J., Edirisinghe, Janaka N., Taylor, Ronald C., Weisenhorn, Pamela, Olson, Robert D., Stevens, Rick L., Rocha, Miguel, Rocha, Isabel, Best, Aaron A., DeJongh, Matthew, Tintle, Nathan L., Parrello, Bruce, Overbeek, Ross, Henry, Christopher S.

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Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System von Best, Aaron A, Porter, Amanda L, Fraley, Susan M, Fraley, Gregory S

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Automated Genome Annotation and Metabolic Model Reconstruction in the SEED and Model SEED von Devoid, Scott, Overbeek, Ross, DeJongh, Matthew, Vonstein, Veronika, Best, Aaron A., Henry, Christopher

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Microbial Community Composition Dependence on Season, Site, and Flow Rate in the Macatawa Watershed von Currier, Jenna K., Dawson, Nicholas J., Horsburgh, Luke, Cooper, Carolyn E. A., Slater, Adam D., Brokus, Sarah A., Wade, Randall D., Best, Aaron A., Pikaart, Michael J., Krueger, Brent P.

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Genomic Minimalism in the Early Diverging Intestinal Parasite Giardia lamblia von Morrison, Hilary G, McArthur, Andrew G, Gillin, Frances D, Aley, Stephen B, Adam, Rodney D, Olsen, Gary J, Best, Aaron A, Cande, W. Zacheus, Chen, Feng, Cipriano, Michael J, Davids, Barbara J, Dawson, Scott C, Elmendorf, Heidi G, Hehl, Adrian B, Holder, Michael E, Huse, Susan M, Kim, Ulandt U, Lasek-Nesselquist, Erica, Manning, Gerard, Nigam, Anuranjini, Nixon, Julie E.J, Palm, Daniel, Passamaneck, Nora E, Prabhu, Anjali, Reich, Claudia I, Reiner, David S, Samuelson, John, Svard, Staffan G, Sogin, Mitchell L

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Gene set analyses for interpreting microarray experiments on prokaryotic organisms von Tintle, Nathan L, Best, Aaron A, DeJongh, Matthew, Van Bruggen, Dirk, Heffron, Fred, Porwollik, Steffen, Taylor, Ronald C

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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

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A global reconnaissance of particulates and metals/metalloids in untreated drinking water sources von Peterson, Jonathan W., Fry, Benjamin M., Wade, Daniel R., Fishman, Ford J., Stid, Jacob T., Peterson, Jonas M., Tarp, Cleveland E., Wade, Randall D., Brokus, Sarah A., Pikaart, Michael J., Krueger, Brent P., Best, Aaron A.

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