Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions von Richelle, Anne, Chiang, Austin W T, Kuo, Chih-Chung, Lewis, Nathan E

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Multiplex secretome engineering enhances recombinant protein production and purity von Kol, Stefan, Ley, Daniel, Wulff, Tune, Decker, Marianne, Arnsdorf, Johnny, Schoffelen, Sanne, Hansen, Anders Holmgaard, Jensen, Tanja Lyholm, Gutierrez, Jahir M., Chiang, Austin W. T., Masson, Helen O., Palsson, Bernhard O., Voldborg, Bjørn G., Pedersen, Lasse Ebdrup, Kildegaard, Helene Faustrup, Lee, Gyun Min, Lewis, Nathan E.

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Correcting for sparsity and interdependence in glycomics by accounting for glycan biosynthesis von Bao, Bokan, Kellman, Benjamin P., Chiang, Austin W. T., Zhang, Yujie, Sorrentino, James T., York, Austin K., Mohammad, Mahmoud A., Haymond, Morey W., Bode, Lars, Lewis, Nathan E.

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Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multi-omics integration von Kellman, Benjamin P., Richelle, Anne, Yang, Jeong-Yeh, Chapla, Digantkumar, Chiang, Austin W. T., Najera, Julia A., Liang, Chenguang, Fürst, Annalee, Bao, Bokan, Koga, Natalia, Mohammad, Mahmoud A., Bruntse, Anders Bech, Haymond, Morey W., Moremen, Kelley W., Bode, Lars, Lewis, Nathan E.

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ZNF263 is a transcriptional regulator of heparin and heparan sulfate biosynthesis von Weiss, Ryan J., Spahn, Philipp N., Toledo, Alejandro Gómez, Chiang, Austin W. T., Kellman, Benjamin P., Li, Jing, Benner, Christopher, Glass, Christopher K., Gordts, Philip L. S. M., Lewis, Nathan E., Eskoa, JeffreyD

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A predictive ensemble classifier for the gene expression diagnosis of ASD at ages 1 to 4 years von Bao, Bokan, Zahiri, Javad, Gazestani, Vahid H., Lopez, Linda, Xiao, Yaqiong, Kim, Raphael, Wen, Teresa H., Chiang, Austin W. T., Nalabolu, Srinivasa, Pierce, Karen, Robasky, Kimberly, Wang, Tianyun, Hoekzema, Kendra, Eichler, Evan E., Lewis, Nathan E., Courchesne, Eric

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LIGHT controls distinct homeostatic and inflammatory gene expression profiles in esophageal fibroblasts via differential HVEM and LTβR-mediated mechanisms von Manresa, Mario C., Wu, Amanda, Nhu, Quan M., Chiang, Austin W. T., Okamoto, Kevin, Miki, Haruka, Kurten, Richard, Pham, Elaine, Duong, Loan D., Lewis, Nathan E., Akuthota, Praveen, Croft, Michael, Aceves, Seema S.

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Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs von Chiang, Austin W T, Wu, Walt Y L, Wang, Ting, Hwang, Ming-Jing

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Genome-wide screens uncover KDM2B as a modifier of protein binding to heparan sulfate von Weiss, Ryan J., Spahn, Philipp N., Chiang, Austin W. T., Liu, Qing, Li, Jing, Hamill, Kristina M., Rother, Sandra, Clausen, Thomas M., Hoeksema, Marten A., Timm, Bryce M., Godula, Kamil, Glass, Christopher K., Tor, Yitzhak, Gordts, Philip L. S. M., Lewis, Nathan E., Esko, Jeffrey D.

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A unique esophageal extracellular matrix proteome alters normal fibroblast function in severe eosinophilic esophagitis von Hsieh, Lance Y., Chiang, Austin W.T., Duong, Loan D., Kuo, Chih-Chung, Dong, Stephanie X., Dohil, Ranjan, Kurten, Richard, Lewis, Nathan E., Aceves, Seema S.

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Systems glycobiology for discovering drug targets, biomarkers, and rational designs for glyco-immunotherapy von Chiang, Austin W. T, Baghdassarian, Hratch M, Kellman, Benjamin P, Bao, Bokan, Sorrentino, James T, Liang, Chenguang, Kuo, Chih-Chung, Masson, Helen O, Lewis, Nathan E

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Author Correction: Genome-wide screens uncover KDM2B as a modifier of protein binding to heparan sulfate von Weiss, Ryan J., Spahn, Philipp N., Chiang, Austin W. T., Liu, Qing, Li, Jing, Hamill, Kristina M., Rother, Sandra, Clausen, Thomas M., Hoeksema, Marten A., Timm, Bryce M., Godula, Kamil, Glass, Christopher K., Tor, Yitzhak, Gordts, Philip L. S. M., Lewis, Nathan E., Esko, Jeffrey D.

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A proteome view of structural, functional, and taxonomic characteristics of major protein domain clusters von Sun, Chia-Tsen, Chiang, Austin W. T., Hwang, Ming-Jing

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Partitioning the human transcriptome using HKera, a novel classifier of housekeeping and tissue-specific genes von Chiang, Austin W T, Shaw, Grace T W, Hwang, Ming-Jing

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Dysregulation of the secretory pathway connects Alzheimer’s disease genetics to aggregate formation von Kuo, Chih-Chung, Chiang, Austin W.T., Baghdassarian, Hratch M., Lewis, Nathan E.

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A consensus-based and readable extension of Linear Code for Reaction Rules (LiCoRR) von Kellman, Benjamin P, Zhang, Yujie, Logomasini, Emma, Meinhardt, Eric, Godinez-Macias, Karla P, Chiang, Austin W T, Sorrentino, James T, Liang, Chenguang, Bao, Bokan, Zhou, Yusen, Akase, Sachiko, Sogabe, Isami, Kouka, Thukaa, Winzeler, Elizabeth A, Wilson, Iain B H, Campbell, Matthew P, Neelamegham, Sriram, Krambeck, Frederick J, Aoki-Kinoshita, Kiyoko F, Lewis, Nathan E

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Artificial intelligence in the analysis of glycosylation data von Li, Haining, Chiang, Austin W.T., Lewis, Nathan E.

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A computational pipeline for identifying kinetic motifs to aid in the design and improvement of synthetic gene circuits von Chiang, Austin W T, Hwang, Ming-Jing

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Increased Production of LIGHT by T Cells in Eosinophilic Esophagitis Promotes Differentiation of Esophageal Fibroblasts Toward an Inflammatory Phenotype von Manresa, Mario C., Chiang, Austin W.T., Kurten, Richard C., Dohil, Ranjan, Brickner, Howard, Dohil, Lucas, Herro, Rana, Akuthota, Praveen, Lewis, Nathan E., Croft, Michael, Aceves, Seema S.

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Understanding system dynamics of an adaptive enzyme network from globally profiled kinetic parameters von Chiang, Austin W T, Liu, Wei-Chung, Charusanti, Pep, Hwang, Ming-Jing

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