Alternative cleavage and polyadenylation in health and disease von Gruber, Andreas J., Zavolan, Mihaela

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A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadeny... von Gruber, Andreas J, Schmidt, Ralf, Gruber, Andreas R, Martin, Georges, Ghosh, Souvik, Belmadani, Manuel, Keller, Walter, Zavolan, Mihaela

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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data von Kanitz, Alexander, Gypas, Foivos, Gruber, Andreas J, Gruber, Andreas R, Martin, Georges, Zavolan, Mihaela

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Discovery of physiological and cancer-related regulators of 3' UTR processing with KAPAC von Gruber, Andreas J, Schmidt, Ralf, Ghosh, Souvik, Martin, Georges, Gruber, Andreas R, van Nimwegen, Erik, Zavolan, Mihaela

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Genome-wide Analysis of Pre-mRNA 3′ End Processing Reveals a Decisive Role of Human Cleavage Factor I in the Regulation of 3′ UTR Length von Martin, Georges, Gruber, Andreas R., Keller, Walter, Zavolan, Mihaela

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PolyASite 2.0: a consolidated atlas of polyadenylation sites from 3′ end sequencing von Herrmann, Christina J, Schmidt, Ralf, Kanitz, Alexander, Artimo, Panu, Gruber, Andreas J, Zavolan, Mihaela

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Global 3′ UTR shortening has a limited effect on protein abundance in proliferating T cells von Gruber, Andreas R., Martin, Georges, Müller, Philipp, Schmidt, Alexander, Gruber, Andreas J., Gumienny, Rafal, Mittal, Nitish, Jayachandran, Rajesh, Pieters, Jean, Keller, Walter, van Nimwegen, Erik, Zavolan, Mihaela

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Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms von Gruber, Andreas J., Gypas, Foivos, Riba, Andrea, Schmidt, Ralf, Zavolan, Mihaela

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ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs von Balwierz, Piotr J, Pachkov, Mikhail, Arnold, Phil, Gruber, Andreas J, Zavolan, Mihaela, van Nimwegen, Erik

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RNAalifold: improved consensus structure prediction for RNA alignments von Bernhart, Stephan H, Hofacker, Ivo L, Will, Sebastian, Gruber, Andreas R, Stadler, Peter F

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An updated human snoRNAome von Jorjani, Hadi, Kehr, Stephanie, Jedlinski, Dominik J, Gumienny, Rafal, Hertel, Jana, Stadler, Peter F, Zavolan, Mihaela, Gruber, Andreas R

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Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33 von Schönemann, Lars, Kühn, Uwe, Martin, Georges, Schäfer, Peter, Gruber, Andreas R, Keller, Walter, Zavolan, Mihaela, Wahle, Elmar

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Vienna RNA Websuite von Gruber, Andreas R, Lorenz, Ronny, Bernhart, Stephan H, Neuböck, Richard, Hofacker, Ivo L

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MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer von Bak, Maciej, van Nimwegen, Erik, Kouzel, Ian U., Gur, Tamer, Schmidt, Ralf, Zavolan, Mihaela, Gruber, Andreas J.

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Investigating the Human Host-ssRNA Virus Interaction Landscape Using the SMEAGOL Toolbox von Lal, Avantika, Galvao Ferrarini, Mariana, Gruber, Andreas J

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Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3′ UTRs von Zünd, David, Gruber, Andreas R, Zavolan, Mihaela, Mühlemann, Oliver

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Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing von Kishore, Shivendra, Gruber, Andreas R, Jedlinski, Dominik J, Syed, Afzal P, Jorjani, Hadi, Zavolan, Mihaela

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Reply to ‘A different perspective on alternative cleavage and polyadenylation’ von Gruber, Andreas J., Zavolan, Mihaela

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scTEA-db: a comprehensive database of novel terminal exon isoforms identified from human single cell transcriptomes von Barquin, Miguel, Kouzel, Ian U, Ehrmann, Beat, Basler, Michael, Gruber, Andreas J

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Neutrophils-From Bone Marrow to First-Line Defense of the Innate Immune System von Kraus, Richard Felix, Gruber, Michael Andreas

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