Biosynthesis of polybrominated aromatic organic compounds by marine bacteria von Agarwal, Vinayak, El Gamal, Abrahim A, Yamanaka, Kazuya, Poth, Dennis, Kersten, Roland D, Schorn, Michelle, Allen, Eric E, Moore, Bradley S

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Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species von Minich, Jeremiah J., Härer, Andreas, Vechinski, Joseph, Frable, Benjamin W., Skelton, Zachary R., Kunselman, Emily, Shane, Michael A., Perry, Daniela S., Gonzalez, Antonio, McDonald, Daniel, Knight, Rob, Michael, Todd P., Allen, Eric E.

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De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities von Narasingarao, Priya, Podell, Sheila, Ugalde, Juan A, Brochier-Armanet, Céline, Emerson, Joanne B, Brocks, Jochen J, Heidelberg, Karla B, Banfield, Jillian F, Allen, Eric E

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Community structure and metabolism through reconstruction of microbial genomes from the environment von Banfield, Jillian F, Tyson, Gene W, Chapman, Jarrod, Hugenholtz, Philip, Allen, Eric E, Ram, Rachna J, Richardson, Paul M, Solovyev, Victor V, Rubin, Edward M, Rokhsar, Daniel S

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Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species von Morin, Phillip A, Archer, Frederick I, Foote, Andrew D, Vilstrup, Julia, Allen, Eric E, Wade, Paul, Durban, John, Parsons, Kim, Pitman, Robert, Li, Lewyn, Bouffard, Pascal, Abel Nielsen, Sandra C, Rasmussen, Morten, Willerslev, Eske, Gilbert, M Thomas P, Harkins, Timothy

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Microbial Community Diversity Within Sediments from Two Geographically Separated Hadal Trenches von Peoples, Logan M, Grammatopoulou, Eleanna, Pombrol, Michelle, Xu, Xiaoxiong, Osuntokun, Oladayo, Blanton, Jessica, Allen, Eric E, Nunnally, Clifton C, Drazen, Jeffrey C, Mayor, Daniel J, Bartlett, Douglas H

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Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly von EMERSON, Joanne B, THOMAS, Brian C, ANDRADE, Karen, ALLEN, Eric E, HEIDELBERG, Karla B, BANFIELD, Jillian F

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Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish von Oliver, Aaron, Podell, Sheila, Wegley Kelly, Linda, Sparagon, Wesley J, Plominsky, Alvaro M, Nelson, Robert S, Laurens, Lieve M L, Augyte, Simona, Sims, Neil A, Nelson, Craig E, Allen, Eric E

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A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes von Podell, Sheila, Blanton, Jessica M., Oliver, Aaron, Schorn, Michelle A., Agarwal, Vinayak, Biggs, Jason S., Moore, Bradley S., Allen, Eric E.

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Genome Sequence of “Candidatus Nitrosoarchaeum limnia” BG20, a Low-Salinity Ammonia-Oxidizing Archaeon from the San Francisco Bay Estuary von MOSIER, Annika C, ALLEN, Eric E, KIM, Maria, FERRIERA, Steven, FRANCIS, Christopher A

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Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria von Penn, Kevin, Jenkins, Caroline, Nett, Markus, Udwary, Daniel W, Gontang, Erin A, McGlinchey, Ryan P, Foster, Brian, Lapidus, Alla, Podell, Sheila, Allen, Eric E, Moore, Bradley S, Jensen, Paul R

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Impacts of the Marine Hatchery Built Environment, Water and Feed on Mucosal Microbiome Colonization Across Ontogeny in Yellowtail Kingfish, Seriola lalandi von Minich, Jeremiah J, Nowak, Barbara, Elizur, Abigail, Knight, Rob, Fielder, Stewart, Allen, Eric E

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Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment von Eloe, Emiley A., Shulse, Christine N., Fadrosh, Douglas W., Williamson, Shannon J., Allen, Eric E., Bartlett, Douglas H.

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Variation in Survival and Gut Microbiome Composition of Hatchery-Grown Native Oysters at Various Locations within the Puget Sound von Kunselman, Emily, Minich, Jeremiah J, Horwith, Micah, Gilbert, Jack A, Allen, Eric E

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High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity von Minich, Jeremiah J, Humphrey, Greg, Benitez, Rodolfo A S, Sanders, Jon, Swafford, Austin, Allen, Eric E, Knight, Rob

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Bacterioplankton drawdown of coral mass-spawned organic matter von Guillemette, Ryan, Kaneko, Ryo, Blanton, Jessica, Tan, Jasmine, Witt, Matthias, Hamilton, Samantha, Allen, Eric E., Medina, Mónica, Hamasaki, Koji, Koch, Boris P., Azam, Farooq

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Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria von Ugalde, Juan A, Podell, Sheila, Narasingarao, Priya, Allen, Eric E

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Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment von Minich, Jeremiah J., Ali, Farhana, Marotz, Clarisse, Belda-Ferre, Pedro, Chiang, Leslie, Shaffer, Justin P., Carpenter, Carolina S., McDonald, Daniel, Gilbert, Jack, Allard, Sarah M., Allen, Eric E., Knight, Rob, Sweeney, Daniel A., Swafford, Austin D.

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Genome dynamics in a natural archaeal population von Allen, Eric E, Tyson, Gene W, Whitaker, Rachel J, Detter, John C, Richardson, Paul M, Banfield, Jillian F

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A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm von Podell, Sheila, Gaasterland, Terry, Allen, Eric E

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