Reversible gene silencing through frameshift indels and frameshift scars provide adaptive plasticity for Mycobacterium tuberculosis von Gupta, Aditi, Alland, David

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Xpert MTB/RIF: a New Pillar in Diagnosis of Extrapulmonary Tuberculosis? von VADWAI, Viral, BOEHME, Catharina, NABETA, Pamela, SHETTY, Anjali, ALLAND, David, RODRIGUES, Camilla

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A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria von Chakravorty, Soumitesh, Helb, Danica, Burday, Michele, Connell, Nancy, Alland, David

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Rapid Molecular Detection of Tuberculosis and Rifampin Resistance von Boehme, Catharina C, Nabeta, Pamela, Hillemann, Doris, Nicol, Mark P, Shenai, Shubhada, Krapp, Fiorella, Allen, Jenny, Tahirli, Rasim, Blakemore, Robert, Rustomjee, Roxana, Milovic, Ana, Jones, Martin, O'Brien, Sean M, Persing, David H, Ruesch-Gerdes, Sabine, Gotuzzo, Eduardo, Rodrigues, Camilla, Alland, David, Perkins, Mark D

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Multicenter Evaluation of the Cepheid Xpert Xpress SARS-CoV-2 Test von Loeffelholz, Michael J, Alland, David, Butler-Wu, Susan M, Pandey, Utsav, Perno, Carlo Frederico, Nava, Alice, Carroll, Karen C, Mostafa, Heba, Davies, Emma, McEwan, Ashley, Rakeman, Jennifer L, Fowler, Randal C, Pawlotsky, Jean-Michel, Fourati, Slim, Banik, Sukalyani, Banada, Padmapriya P, Swaminathan, Shobha, Chakravorty, Soumitesh, Kwiatkowski, Robert W, Chu, Victor C, Kop, JoAnn, Gaur, Rajiv, Sin, Mandy L Y, Nguyen, Duy, Singh, Simranjit, Zhang, Na, Persing, David H

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SQ109 Targets MmpL3, a Membrane Transporter of Trehalose Monomycolate Involved in Mycolic Acid Donation to the Cell Wall Core of Mycobacterium tuberculosis von Tahlan, Kapil, Wilson, Regina, Kastrinsky, David B, Arora, Kriti, Nair, Vinod, Fischer, Elizabeth, Barnes, S. Whitney, Walker, John R, Alland, David, Barry, Clifton E., III, Boshoff, Helena I

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Evaluation of the Analytical Performance of the Xpert MTB/RIF Assay von Blakemore, Robert, Story, Elizabeth, Helb, Danica, Kop, JoAnn, Banada, Padmapriya, Owens, Michelle R, Chakravorty, Soumitesh, Jones, Martin, Alland, David

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Feasibility, diagnostic accuracy, and effectiveness of decentralised use of the Xpert MTB/RIF test for diagnosis of tuberculosis and multidrug resistance: a multicentre implementat... von Boehme, Catharina C, Dr, Nicol, Mark P, Prof, Nabeta, Pamela, MD, Michael, Joy S, Prof, Gotuzzo, Eduardo, MD, Tahirli, Rasim, MD, Gler, Ma Tarcela, MD, Blakemore, Robert, BSc, Worodria, William, MMed, Gray, Christen, MPH, Huang, Laurence, Prof, Caceres, Tatiana, BSc, Mehdiyev, Rafail, MD, Raymond, Lawrence, MD, Whitelaw, Andrew, MD, Sagadevan, Kalaiselvan, MSc, Alexander, Heather, PhD, Albert, Heidi, PhD, Cobelens, Frank, PhD, Cox, Helen, PhD, Alland, David, Prof, Perkins, Mark D, MD

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Rapid Detection of Mycobacterium tuberculosis and Rifampin Resistance by Use of On-Demand, Near-Patient Technology von HELB, Danica, JONES, Martin, SAFI, Hassan, BLAKEMORE, Robert, NGOC LAN, N. T, JONES-LOPEZ, Edward C, LEVI, Michael, BURDAY, Michele, AYAKAKA, Irene, MUGERWA, Roy D, MCMILLAN, Bill, WINN-DEEN, Emily, STORY, Elizabeth, CHRISTEL, Lee, DAILEY, Peter, PERKINS, Mark D, PERSING, David H, ALLAND, David, BOEHME, Catharina, WALLACE, Ellen, HO, Ken, KOP, Joann, OWENS, Michelle R, RODGERS, Richard, BANADA, Padmapriya

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A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome von Chitale, Poonam, Lemenze, Alexander D., Fogarty, Emily C., Shah, Avi, Grady, Courtney, Odom-Mabey, Aubrey R., Johnson, W. Evan, Yang, Jason H., Eren, A. Murat, Brosch, Roland, Kumar, Pradeep, Alland, David

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Mycobacterium tuberculosis progresses through two phases of latent infection in humans von Colangeli, Roberto, Gupta, Aditi, Vinhas, Solange Alves, Chippada Venkata, Uma Deepthi, Kim, Soyeon, Grady, Courtney, Jones-López, Edward C., Soteropoulos, Patricia, Palaci, Moisés, Marques-Rodrigues, Patrícia, Salgame, Padmini, Ellner, Jerrold J., Dietze, Reynaldo, Alland, David

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Inactivation of SARS-CoV-2 virus in saliva using a guanidium based transport medium suitable for RT-PCR diagnostic assays von Banik, Sukalyani, Saibire, Kaheerman, Suryavanshi, Shraddha, Johns, Glenn, Chakravorty, Soumitesh, Kwiatkowski, Robert, Alland, David, Banada, Padmapriya P

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Origin and Dynamics of Mycobacterium tuberculosis Subpopulations That Predictably Generate Drug Tolerance and Resistance von Sebastian, Jees, Thomas, Anooja, Levine, Carly, Shrestha, Riju, Levy, Shawn, Safi, Hassan, Pentakota, Sri Ram, Kumar, Pradeep, Alland, David

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Persistence of SARS-CoV-2 in saliva: Implications for late-stage diagnosis and infectious duration von Chopoorian, Abby, Banada, Padmapriya, Reiss, Robert, Elson, David, Desind, Samuel, Park, Claire, Banik, Sukalyani, Hennig, Emily, Wats, Aanchal, Togba, Austin, Wei, Abraham, Daivaa, Naranjargal, Palo, Laura, Hirsch, Mitchell, Campbell, Carter, Saiganesh, Pooja, Alland, David, Xie, Yingda L

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Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks von Manning, Shannon D, Motiwala, Alifiya S, Springman, A. Cody, Qi, Weihong, Lacher, David W, Ouellette, Lindsey M, Mladonicky, Janice M, Somsel, Patricia, Rudrik, James T, Dietrich, Stephen E, Zhang, Wei, Swaminathan, Bala, Alland, David, Whittam, Thomas S

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A Novel Sample Processing Method for Rapid Detection of Tuberculosis in the Stool of Pediatric Patients Using the Xpert MTB/RIF Assay von Banada, Padmapriya P, Naidoo, Uvistra, Deshpande, Srinidhi, Karim, Farina, Flynn, JoAnne L, O'Malley, Melanie, Jones, Martin, Nanassy, Oliver, Jeena, Prakash, Alland, David

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An expanded RT-PCR melting temperature coding assay to rapidly identify all known SARS-CoV-2 variants and sub-variants of concern von Banada, Padmapriya P., Green, Raquel, Streck, Deanna, Kurvathi, Rohini, Reiss, Robert, Banik, Sukalyani, Daivaa, Naranjargal, Montalvan, Ibsen, Jones, Robert, Marras, Salvatore A. E., Chakravorty, Soumitesh, Alland, David

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Transmission phenotype of Mycobacterium tuberculosis strains is mechanistically linked to induction of distinct pulmonary pathology von Verma, Sheetal, Bhatt, Kamlesh, Lovey, Arianne, Ribeiro-Rodrigues, Rodrigo, Durbin, Joan, Jones-López, Edward C, Palaci, Moises, Vinhas, Solange A, Alland, David, Dietze, Reynaldo, Ellner, Jerrold J, Salgame, Padmini

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Author Correction: A comprehensive update to the Mycobacterium tuberculosis H37Rv reference genome von Chitale, Poonam, Lemenze, Alexander D., Fogarty, Emily C., Shah, Avi, Grady, Courtney, Odom-Mabey, Aubrey R., Johnson, W. Evan, Yang, Jason H., Eren, A. Murat, Brosch, Roland, Kumar, Pradeep, Alland, David

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Whole genome sequencing of Mycobacterium tuberculosis reveals slow growth and low mutation rates during latent infections in humans von Colangeli, Roberto, Arcus, Vic L, Cursons, Ray T, Ruthe, Ali, Karalus, Noel, Coley, Kathy, Manning, Shannon D, Kim, Soyeon, Marchiano, Emily, Alland, David

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