Microarray-based genomic selection for high-throughput resequencing von Okou, David T, Steinberg, Karyn Meltz, Middle, Christina, Cutler, David J, Albert, Thomas J, Zwick, Michael E

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Direct selection of human genomic loci by microarray hybridization von Albert, Thomas J, Molla, Michael N, Muzny, Donna M, Nazareth, Lynne, Wheeler, David, Song, Xingzhi, Richmond, Todd A, Middle, Chris M, Rodesch, Matthew J, Packard, Charles J, Weinstock, George M, Gibbs, Richard A

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Systematic comparison of three genomic enrichment methods for massively parallel DNA sequencing von Teer, Jamie K, Bonnycastle, Lori L, Chines, Peter S, Hansen, Nancy F, Aoyama, Natsuyo, Swift, Amy J, Abaan, Hatice Ozel, Albert, Thomas J, Margulies, Elliott H, Green, Eric D, Collins, Francis S, Mullikin, James C, Biesecker, Leslie G

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Identification of a Nitroimidazo-Oxazine-Specific Protein Involved in PA-824 Resistance in Mycobacterium tuberculosis von Manjunatha, Ujjini H., Boshoff, Helena, Dowd, Cynthia S., Zhang, Liang, Albert, Thomas J., Norton, Jason E., Daniels, Lacy, Dick, Thomas, Pang, Siew Siew, Barry, Clifton E.

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Comparative genome sequencing of Escherichia coli allows observation of bacterial evolution on a laboratory timescale von Herring, Christopher D, Raghunathan, Anu, Honisch, Christiane, Patel, Trina, Applebee, M Kenyon, Joyce, Andrew R, Albert, Thomas J, Blattner, Frederick R, van den Boom, Dirk, Cantor, Charles R, Palsson, Bernhard Ø

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Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing von Heap, Graham A., Yang, Jennie H.M., Downes, Kate, Healy, Barry C., Hunt, Karen A., Bockett, Nicholas, Franke, Lude, Dubois, Patrick C., Mein, Charles A., Dobson, Richard J., Albert, Thomas J., Rodesch, Matthew J., Clayton, David G., Todd, John A., van Heel, David A., Plagnol, Vincent

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Stepwise Evolution Improves Identification of Diverse Peptides Binding to a Protein Target von Lyamichev, Victor I., Goodrich, Lauren E., Sullivan, Eric H., Bannen, Ryan M., Benz, Joerg, Albert, Thomas J., Patel, Jigar J.

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Repeat subtraction-mediated sequence capture from a complex genome von Fu, Yan, Springer, Nathan M, Gerhardt, Daniel J, Ying, Kai, Yeh, Cheng-Ting, Wu, Wei, Swanson-Wagner, Ruth, D'Ascenzo, Mark, Millard, Tracy, Freeberg, Lindsay, Aoyama, Natsuyo, Kitzman, Jacob, Burgess, Daniel, Richmond, Todd, Albert, Thomas J, Barbazuk, W. Brad, Jeddeloh, Jeffrey A, Schnable, Patrick S

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Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori von Albert, Thomas J, Dailidiene, Daiva, Dailide, Giedrius, Norton, Jason E, Kalia, Awdhesh, Richmond, Todd A, Molla, Michael, Singh, Jaz, Green, Roland D, Berg, Douglas E

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Gene expression analysis using oligonucleotide arrays produced by maskless photolithography von Nuwaysir, Emile F, Huang, Wei, Albert, Thomas J, Singh, Jaz, Nuwaysir, Kate, Pitas, Alan, Richmond, Todd, Gorski, Tom, Berg, James P, Ballin, Jeff, McCormick, Mark, Norton, Jason, Pollock, Tim, Sumwalt, Terry, Butcher, Lawrence, Porter, DeAnn, Molla, Michael, Hall, Christine, Blattner, Fred, Sussman, Michael R, Wallace, Rodney L, Cerrina, Franco, Green, Roland D

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Discovery of a microbial transglutaminase enabling highly site-specific labeling of proteins von Steffen, Wojtek, Ko, Fu Chong, Patel, Jigar, Lyamichev, Victor, Albert, Thomas J., Benz, Jörg, Rudolph, Markus G., Bergmann, Frank, Streidl, Thomas, Kratzsch, Peter, Boenitz-Dulat, Mara, Oelschlaegel, Tobias, Schraeml, Michael

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Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution von Sahlén, Pelin, Abdullayev, Ilgar, Ramsköld, Daniel, Matskova, Liudmila, Rilakovic, Nemanja, Lötstedt, Britta, Albert, Thomas J, Lundeberg, Joakim, Sandberg, Rickard

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Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities von Bainbridge, Matthew N, Wang, Min, Wu, Yuanqing, Newsham, Irene, Muzny, Donna M, Jefferies, John L, Albert, Thomas J, Burgess, Daniel L, Gibbs, Richard A

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SNP-specific array-based allele-specific expression analysis von Bjornsson, Hans T, Albert, Thomas J, Ladd-Acosta, Christine M, Green, Roland D, Rongione, Michael A, Middle, Christina M, Irizarry, Rafael A, Broman, Karl W, Feinberg, Andrew P

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Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays von Matejková, Petra, Strouhal, Michal, Smajs, David, Norris, Steven J, Palzkill, Timothy, Petrosino, Joseph F, Sodergren, Erica, Norton, Jason E, Singh, Jaz, Richmond, Todd A, Molla, Michael N, Albert, Thomas J, Weinstock, George M

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Proteome-wide Epitope Mapping of Antibodies Using Ultra-dense Peptide Arrays von Forsström, Björn, Axnäs, Barbara Bisławska, Stengele, Klaus-Peter, Bühler, Jochen, Albert, Thomas J., Richmond, Todd A., Hu, Francis Jingxin, Nilsson, Peter, Hudson, Elton P., Rockberg, Johan, Uhlen, Mathias

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Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays von Wong, Christopher W, Albert, Thomas J, Vega, Vinsensius B, Norton, Jason E, Cutler, David J, Richmond, Todd A, Stanton, Lawrence W, Liu, Edison T, Miller, Lance D

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Whole exome capture in solution with 3 Gbp of data von Bainbridge, Matthew N, Wang, Min, Burgess, Daniel L, Kovar, Christie, Rodesch, Matthew J, D'Ascenzo, Mark, Kitzman, Jacob, Wu, Yuan-Qing, Newsham, Irene, Richmond, Todd A, Jeddeloh, Jeffrey A, Muzny, Donna, Albert, Thomas J, Gibbs, Richard A

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Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82 von Haun, William J, Hyten, David L, Xu, Wayne W, Gerhardt, Daniel J, Albert, Thomas J, Richmond, Todd, Jeddeloh, Jeffrey A, Jia, Gaofeng, Springer, Nathan M, Vance, Carroll P, Stupar, Robert M

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Directed Evolution of Ionizing Radiation Resistance in Escherichia coli von HARRIS, Dennis R, POLLOCK, Steve V, MIDDLE, Christina M, NORTON, Jason E, POPELARS, Michael C, HAO LI, KLUGMAN, Sarit A, HAMILTON, Lindsay L, BANE, Lukas B, PENNACCHIO, Len A, ALBERT, Thomas J, PERNA, Nicole T, WOOD, Elizabeth A, COX, Michael M, BATTISTA, John R, GOIFFON, Reece J, KLINGELE, Audrey J, CABOT, Eric L, SCHACKWITZ, Wendy, MARTIN, Joel, EGGINGTON, Julie, DURFEE, Timothy J

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