Genome architectures revealed by tethered chromosome conformation capture and population-based modeling von Kalhor, Reza, Tjong, Harianto, Jayathilaka, Nimanthi, Alber, Frank, Chen, Lin

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Physical tethering and volume exclusion determine higher-order genome organization in budding yeast von Tjong, Harianto, Gong, Ke, Chen, Lin, Alber, Frank

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TopDom: an efficient and deterministic method for identifying topological domains in genomes von Shin, Hanjun, Shi, Yi, Dai, Chao, Tjong, Harianto, Gong, Ke, Alber, Frank, Zhou, Xianghong Jasmine

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CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data von Li, Wenyuan, Li, Qingjiao, Kang, Shuli, Same, Mary, Zhou, Yonggang, Sun, Carol, Liu, Chun-Chi, Matsuoka, Lea, Sher, Linda, Wong, Wing Hung, Alber, Frank, Zhou, Xianghong Jasmine

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Population-based 3D genome structure analysis reveals driving forces in spatial genome organization von Tjong, Harianto, Li, Wenyuan, Kalhor, Reza, Dai, Chao, Hao, Shengli, Gong, Ke, Zhou, Yonggang, Li, Haochen, Zhou, Xianghong Jasmine, Le Gros, Mark A., Larabell, Carolyn A., Chen, Lin, Alber, Frank

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The three-dimensional genome organization of Drosophila melanogaster through data integration von Li, Qingjiao, Tjong, Harianto, Li, Xiao, Gong, Ke, Zhou, Xianghong Jasmine, Chiolo, Irene, Alber, Frank

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Comprehensive characterization of neutrophil genome topology von Zhu, Yina, Gong, Ke, Denholtz, Matthew, Chandra, Vivek, Kamps, Mark P, Alber, Frank, Murre, Cornelis

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The molecular architecture of the nuclear pore complex von Chait, Brian T, Sali, Andrej, Rout, Michael P, Alber, Frank, Dokudovskaya, Svetlana, Veenhoff, Liesbeth M, Zhang, Wenzhu, Kipper, Julia, Devos, Damien, Suprapto, Adisetyantari, Karni-Schmidt, Orit, Williams, Rosemary

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High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching von Xu, Min, Beck, Martin, Alber, Frank

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Determining the architectures of macromolecular assemblies von Chait, Brian T, Rout, Michael P, Sali, Andrej, Alber, Frank, Dokudovskaya, Svetlana, Veenhoff, Liesbeth M, Zhang, Wenzhu, Kipper, Julia, Devos, Damien, Suprapto, Adisetyantari, Karni-Schmidt, Orit, Williams, Rosemary

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Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer von Stackpole, Mary L., Zeng, Weihua, Li, Shuo, Liu, Chun-Chi, Zhou, Yonggang, He, Shanshan, Yeh, Angela, Wang, Ziye, Sun, Fengzhu, Li, Qingjiao, Yuan, Zuyang, Yildirim, Asli, Chen, Pin-Jung, Winograd, Paul, Tran, Benjamin, Lee, Yi-Te, Li, Paul Shize, Noor, Zorawar, Yokomizo, Megumi, Ahuja, Preeti, Zhu, Yazhen, Tseng, Hsian-Rong, Tomlinson, James S., Garon, Edward, French, Samuel, Magyar, Clara E., Dry, Sarah, Lajonchere, Clara, Geschwind, Daniel, Choi, Gina, Saab, Sammy, Alber, Frank, Wong, Wing Hung, Dubinett, Steven M., Aberle, Denise R., Agopian, Vatche, Han, Steven-Huy B., Ni, Xiaohui, Li, Wenyuan, Zhou, Xianghong Jasmine

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De Novo Structural Pattern Mining in Cellular Electron Cryotomograms von Xu, Min, Singla, Jitin, Tocheva, Elitza I., Chang, Yi-Wei, Stevens, Raymond C., Jensen, Grant J., Alber, Frank

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Integrating diverse data for structure determination of macromolecular assemblies von Alber, Frank, Förster, Friedrich, Korkin, Dmitry, Topf, Maya, Sali, Andrej

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Sensitive detection of tumor mutations from blood and its application to immunotherapy prognosis von Li, Shuo, Noor, Zorawar S., Zeng, Weihua, Stackpole, Mary L., Ni, Xiaohui, Zhou, Yonggang, Yuan, Zuyang, Wong, Wing Hung, Agopian, Vatche G., Dubinett, Steven M., Alber, Frank, Li, Wenyuan, Garon, Edward B., Zhou, Xianghong Jasmine

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Comparative 3D genome structure analysis of the fission and the budding yeast von Gong, Ke, Tjong, Harianto, Zhou, Xianghong Jasmine, Alber, Frank

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Components of coated vesicles and nuclear pore complexes share a common molecular architecture von Devos, Damien, Dokudovskaya, Svetlana, Alber, Frank, Williams, Rosemary, Chait, Brian T, Sali, Andrej, Rout, Michael P

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Simple Fold Composition and Modular Architecture of the Nuclear Pore Complex von Devos, Damien, Dokudovskaya, Svetlana, Williams, Rosemary, Alber, Frank, Eswar, Narayanan, Chait, Brian T., Rout, Michael P., Sali, Andrej

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Studying the impact of the nuclear topography on gene function

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Author Correction: Cost-effective methylome sequencing of cell-free DNA for accurately detecting and locating cancer von Stackpole, Mary L., Zeng, Weihua, Li, Shuo, Liu, Chun-Chi, Zhou, Yonggang, He, Shanshan, Yeh, Angela, Wang, Ziye, Sun, Fengzhu, Li, Qingjiao, Yuan, Zuyang, Yildirim, Asli, Chen, Pin-Jung, Winograd, Paul, Tran, Benjamin, Lee, Yi-Te, Li, Paul Shize, Noor, Zorawar, Yokomizo, Megumi, Ahuja, Preeti, Zhu, Yazhen, Tseng, Hsian-Rong, Tomlinson, James S., Garon, Edward, French, Samuel, Magyar, Clara E., Dry, Sarah, Lajonchere, Clara, Geschwind, Daniel, Choi, Gina, Saab, Sammy, Alber, Frank, Wong, Wing Hung, Dubinett, Steven M., Aberle, Denise R., Agopian, Vatche, Han, Steven-Huy B., Ni, Xiaohui, Li, Wenyuan, Zhou, Xianghong Jasmine

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Mining 3D genome structure populations identifies major factors governing the stability of regulatory communities von Dai, Chao, Li, Wenyuan, Tjong, Harianto, Hao, Shengli, Zhou, Yonggang, Li, Qingjiao, Chen, Lin, Zhu, Bing, Alber, Frank, Jasmine Zhou, Xianghong

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