Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data von Pliner, Hannah A., Packer, Jonathan S., McFaline-Figueroa, José L., Cusanovich, Darren A., Daza, Riza M., Aghamirzaie, Delasa, Srivatsan, Sanjay, Qiu, Xiaojie, Jackson, Dana, Minkina, Anna, Adey, Andrew C., Steemers, Frank J., Shendure, Jay, Trapnell, Cole

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Joint profiling of chromatin accessibility and gene expression in thousands of single cells von Cao, Junyue, Cusanovich, Darren A, Ramani, Vijay, Aghamirzaie, Delasa, Pliner, Hannah A, Hill, Andrew J, Daza, Riza M, McFaline-Figueroa, Jose L, Packer, Jonathan S, Christiansen, Lena, Steemers, Frank J, Adey, Andrew C, Trapnell, Cole, Shendure, Jay

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Highly scalable generation of DNA methylation profiles in single cells von Mulqueen, Ryan M, Pokholok, Dmitry, Norberg, Steven J, Torkenczy, Kristof A, Fields, Andrew J, Sun, Duanchen, Sinnamon, John R, Shendure, Jay, Trapnell, Cole, O'Roak, Brian J, Xia, Zheng, Steemers, Frank J, Adey, Andrew C

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Meet the author: Andrew Adey von Adey, Andrew C

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Neutralization of SARS-CoV-2 variants by convalescent and BNT162b2 vaccinated serum von Bates, Timothy A., Leier, Hans C., Lyski, Zoe L., McBride, Savannah K., Coulter, Felicity J., Weinstein, Jules B., Goodman, James R., Lu, Zhengchun, Siegel, Sarah A. R., Sullivan, Peter, Strnad, Matt, Brunton, Amanda E., Lee, David X., Adey, Andrew C., Bimber, Benjamin N., O’Roak, Brian J., Curlin, Marcel E., Messer, William B., Tafesse, Fikadu G.

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Spatially mapped single-cell chromatin accessibility von Thornton, Casey A., Mulqueen, Ryan M., Torkenczy, Kristof A., Nishida, Andrew, Lowenstein, Eve G., Fields, Andrew J., Steemers, Frank J., Zhang, Wenri, McConnell, Heather L., Woltjer, Randy L., Mishra, Anusha, Wright, Kevin M., Adey, Andrew C.

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High-throughput robust single-cell DNA methylation profiling with sciMETv2 von Nichols, Ruth V., O’Connell, Brendan L., Mulqueen, Ryan M., Thomas, Jerushah, Woodfin, Ashley R., Acharya, Sonia, Mandel, Gail, Pokholok, Dmitry, Steemers, Frank J., Adey, Andrew C.

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The accessible chromatin landscape of the murine hippocampus at single-cell resolution von Sinnamon, John R, Torkenczy, Kristof A, Linhoff, Michael W, Vitak, Sarah A, Mulqueen, Ryan M, Pliner, Hannah A, Trapnell, Cole, Steemers, Frank J, Mandel, Gail, Adey, Andrew C

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txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility von Zhang, Hao, Mulqueen, Ryan M, Iannuzo, Natalie, Farrera, Dominique O, Polverino, Francesca, Galligan, James J, Ledford, Julie G, Adey, Andrew C, Cusanovich, Darren A

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sciMET-cap: high-throughput single-cell methylation analysis with a reduced sequencing burden von Acharya, Sonia N, Nichols, Ruth V, Rylaarsdam, Lauren E, O'Connell, Brendan L, Braun, Theodore P, Adey, Andrew C

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Tagmentation-based single-cell genomics von Adey, Andrew C

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Epigenetic loss of heterogeneity from low to high grade localized prostate tumours von Eksi, Sebnem Ece, Chitsazan, Alex, Sayar, Zeynep, Thomas, George V., Fields, Andrew J., Kopp, Ryan P., Spellman, Paul T., Adey, Andrew C.

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Integration of Single-Cell Genomics Datasets von Adey, Andrew C.

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Single-cell multiomics to probe relationships between histone modifications and transcription von Adey, Andrew C.

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Parents, pre-schoolers and learning with technology at home: some implications for policy von Plowman, L., Stevenson, O., McPake, J., Stephen, C., Adey, C.

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Identifying phenotype-associated subpopulations by integrating bulk and single-cell sequencing data von Sun, Duanchen, Guan, Xiangnan, Moran, Amy E., Wu, Ling-Yun, Qian, David Z., Schedin, Pepper, Dai, Mu-Shui, Danilov, Alexey V., Alumkal, Joshi J., Adey, Andrew C., Spellman, Paul T., Xia, Zheng

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Haplotype resolution at the single-cell level von Adey, Andrew C.

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Multiplex imaging of localized prostate tumors reveals altered spatial organization of AR-positive cells in the microenvironment von Ak, Çiğdem, Sayar, Zeynep, Thibault, Guillaume, Burlingame, Erik A., Kuykendall, M.J., Eng, Jennifer, Chitsazan, Alex, Chin, Koei, Adey, Andrew C., Boniface, Christopher, Spellman, Paul T., Thomas, George V., Kopp, Ryan P., Demir, Emek, Chang, Young Hwan, Stavrinides, Vasilis, Eksi, Sebnem Ece

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Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility von Queitsch, Konstantin, Moore, Travis W, O'Connell, Brendan L, Nichols, Ruth V, Muschler, John L, Keith, Dove, Lopez, Charles, Sears, Rosalie C, Mills, Gordon B, Yardımcı, Galip Gürkan, Adey, Andrew C

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High-Throughput Single-Cell Sequencing with Linear Amplification von Yin, Yi, Jiang, Yue, Lam, Kwan-Wood Gabriel, Berletch, Joel B., Disteche, Christine M., Noble, William S., Steemers, Frank J., Camerini-Otero, R. Daniel, Adey, Andrew C., Shendure, Jay

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