Comparative genomics of xylose-fermenting fungi for enhanced biofuel production von Wohlbach, Dana J, Kuo, Alan, Sato, Trey K, Potts, Katlyn M, Salamov, Asaf A, LaButti, Kurt M, Sun, Hui, Clum, Alicia, Pangilinan, Jasmyn L, Lindquist, Erika A, Lucas, Susan, Lapidus, Alla, Jin, Mingjie, Gunawan, Christa, Balan, Venkatesh, Dale, Bruce E, Jeffries, Thomas W, Zinkel, Robert, Barry, Kerrie W, Grigoriev, Igor V, Gasch, Audrey P

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Ab initio gene finding in Drosophila genomic DNA von Salamov, A A, Solovyev, V V

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Large-scale genomic analyses with machine learning uncover predictive patterns associated with fungal phytopathogenic lifestyles and traits von Dort, E. N., Layne, E., Feau, N., Butyaev, A., Henrissat, B., Martin, F. M., Haridas, S., Salamov, A., Grigoriev, I. V., Blanchette, M., Hamelin, R. C.

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The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi von Aguilar-Pontes, M.V., Brandl, J., McDonnell, E., Strasser, K., Nguyen, T.T.M., Riley, R., Mondo, S., Salamov, A., Nybo, J.L., Vesth, T.C., Grigoriev, I.V., Andersen, M.R., Tsang, A., de Vries, R.P.

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Identification of Promoter Regions and Regulatory Sites von Solovyev, Victor V., Shahmuradov, Ilham A., Salamov, Asaf A.

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Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities von Hugenholtz, Philip, Martín, Héctor García, Ivanova, Natalia, Kunin, Victor, Warnecke, Falk, Barry, Kerrie W, McHardy, Alice C, Yeates, Christine, He, Shaomei, Salamov, Asaf A, Szeto, Ernest, Dalin, Eileen, Putnam, Nik H, Shapiro, Harris J, Pangilinan, Jasmyn L, Rigoutsos, Isidore, Kyrpides, Nikos C, Blackall, Linda Louise, McMahon, Katherine D

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Comparative genomics of biotechnologically important yeasts von Riley, Robert, Haridas, Sajeet, Wolfe, Kenneth H., Lopes, Mariana R., Hittinger, Chris Todd, Göker, Markus, Salamov, Asaf A., Wisecaver, Jennifer H., Long, Tanya M., Calvey, Christopher H., Aerts, Andrea L., Barry, Kerrie W., Choi, Cindy, Clum, Alicia, Coughlan, Aisling Y., Deshpande, Shweta, Douglass, Alexander P., Hanson, Sara J., Klenk, Hans-Peter, LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lipzen, Anna M., Meier-Kolthoff, Jan P., Ohm, Robin A., Otillar, Robert P., Pangilinan, Jasmyn L., Peng, Yi, Rokas, Antonis, Rosa, Carlos A., Scheuner, Carmen, Sibirny, Andriy A., Slot, Jason C., Stielow, J. Benjamin, Sun, Hui, Kurtzman, Cletus P., Blackwell, Meredith, Grigoriev, Igor V., Jeffries, Thomas W.

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Sorghum bicolor genome and the diversification of grasses von Paterson, Andrew H, Bowers, John E, Bruggmann, Remy, Dubchak, Inna, Grimwood, Jane, Gundlach, Heidrun, Haberer, Georg, Hellsten, Uffe, Mitros, Therese, Poliakov, Alexander, Schmutz, Jeremy, Spannagl, Manuel, Tang, Haibao, Wang, Xiyin, Wicker, Thomas, Ware, Doreen

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Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi von Wilken, St. Elmo, Seppälä, Susanna, Lankiewicz, Thomas S., Saxena, Mohan, Henske, John K., Salamov, Asaf A., Grigoriev, Igor V., O’Malley, Michelle A.

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Assessing protein coding region integrity in cDNA sequencing projects von Salamov, A.A, Nishikawa, T, Swindells, M.B

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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis von Fernandez-Fueyo, Elena, Ruiz-Dueñas, Francisco J., Ferreira, Patricia, Floudas, Dimitrios, Hibbett, David S., Canessa, Paulo, Larrondo, Luis F., James, Tim Y., Seelenfreund, Daniela, Lobos, Sergio, Polanco, Rubén, Tello, Mario, Honda, Yoichi, Watanabe, Takahito, Watanabe, Takashi, San, Ryu Jae, Kubicek, Christian P., Schmoll, Monika, Gaskell, Jill, Hammel, Kenneth E., St. John, Franz J., Wymelenberg, Amber Vanden, Sabat, Grzegorz, BonDurant, Sandra Splinter, Syed, Khajamohiddin, Yadav, Jagjit S., Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Lavín, José L., Oguiza, José A., Perez, Gumer, Pisabarro, Antonio G., Ramirez, Lucia, Santoyo, Francisco, Master, Emma, Coutinho, Pedro M., Henrissat, Bernard, Lombard, Vincent, Magnuson, Jon Karl, Kües, Ursula, Hori, Chiaki, Igarashi, Kiyohiko, Samejima, Masahiro, Held, Benjamin W., Barry, Kerrie W., LaButti, Kurt M., Lapidus, Alla, Lindquist, Erika A., Lucas, Susan M., Riley, Robert, Salamov, Asaf A., Hoffmeister, Dirk, Schwenk, Daniel, Hadar, Yitzhak, Yarden, Oded, de Vries, Ronald P., Wiebenga, Ad, Stenlid, Jan, Eastwood, Daniel, Grigoriev, Igor V., Berka, Randy M., Blanchette, Robert A., Kersten, Phil, Martinez, Angel T., Vicuna, Rafael, Cullen, Dan

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Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames von Solovyev, Victor V., Salamov, Asaf A., Lawrence, Charles B.

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Protein secondary structure prediction using local alignments von Salamov, Asaf A, Solovyev, Victor V

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Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section... von Magain, Nicolas, Miadlikowska, Jolanta, Mueller, Olaf, Gajdeczka, Michael, Truong, Camille, Salamov, Asaf A., Dubchak, Inna, Grigoriev, Igor V., Goffinet, Bernard, Sérusiaux, Emmanuël, Lutzoni, François

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Experience gained in a number of countries from using thermal power stations equipped with diesel and gas engines von SALAMOV, A. A

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Circulating fluidized bed boilers abroad von Salamov, A. A.

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Recognition of 3' -processing sites of human mRNA precursors von Salamov, A.A., Solovyev, V.V.

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Predicting alpha-helix and beta-strand segments of globular proteins von Solovyev, V.V, Salamov, A.A

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Phylogenetic and phylogenomic overview of the Polyporales von Binder, Manfred, Justo, Alfredo, Riley, Robert, Salamov, Asaf, Lopez-Giraldez, Francesc, Sjökvist, Elisabet, Copeland, Alex, Foster, Brian, Sun, Hui, Larsson, Ellen, Larsson, Karl-Henrik, Townsend, Jeffrey, Grigoriev, Igor V., Hibbett, David S.

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The amphioxus genome and the evolution of the chordate karyotype von Satoh, Nori, Rokhsar, Daniel S, Putnam, Nicholas H, Butts, Thomas, Ferrier, David E. K, Furlong, Rebecca F, Hellsten, Uffe, Kawashima, Takeshi, Robinson-Rechavi, Marc, Shoguchi, Eiichi, Terry, Astrid, Yu, Jr-Kai, Benito-Gutiérrez, E lia, Dubchak, Inna, Garcia-Fernàndez, Jordi, Gibson-Brown, Jeremy J, Grigoriev, Igor V, Horton, Amy C, de Jong, Pieter J, Jurka, Jerzy, Kapitonov, Vladimir V, Kohara, Yuji, Kuroki, Yoko, Lindquist, Erika, Lucas, Susan, Osoegawa, Kazutoyo, Pennacchio, Len A, Salamov, Asaf A, Satou, Yutaka, Sauka-Spengler, Tatjana, Schmutz, Jeremy, Shin-I, Tadasu, Toyoda, Atsushi, Bronner-Fraser, Marianne, Fujiyama, Asao, Holland, Linda Z, Holland, Peter W. H

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