PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions von Bendl, Jaroslav, Musil, Miloš, Štourač, Jan, Zendulka, Jaroslav, Damborský, Jiří, Brezovský, Jan

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HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information von Sumbalova, Lenka, Stourac, Jan, Martinek, Tomas, Bednar, David, Damborsky, Jiri

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CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories von Jurcik, Adam, Bednar, David, Byska, Jan, Marques, Sergio M, Furmanova, Katarina, Daniel, Lukas, Kokkonen, Piia, Brezovsky, Jan, Strnad, Ondrej, Stourac, Jan, Pavelka, Antonin, Manak, Martin, Damborsky, Jiri, Kozlikova, Barbora

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PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations von Bendl, Jaroslav, Stourac, Jan, Salanda, Ondrej, Pavelka, Antonin, Wieben, Eric D, Zendulka, Jaroslav, Brezovsky, Jan, Damborsky, Jiri

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Visual Support for the Loop Grafting Workflow on Proteins von Opaleny, Filip, Ulbrich, Pavol, Planas-Iglesias, Joan, Byska, Jan, stourac, Jan, Bednar, David, Furmanova, Katarina, Kozlikova, Barbora

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HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering von Bendl, Jaroslav, Stourac, Jan, Sebestova, Eva, Vavra, Ondrej, Musil, Milos, Brezovsky, Jan, Damborsky, Jiri

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FireProtDB: database of manually curated protein stability data von Stourac, Jan, Dubrava, Juraj, Musil, Milos, Horackova, Jana, Damborsky, Jiri, Mazurenko, Stanislav, Bednar, David

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FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction von Musil, Milos, Khan, Rayyan Tariq, Beier, Andy, Stourac, Jan, Konegger, Hannes, Damborsky, Jiri, Bednar, David

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A computational workflow for analysis of missense mutations in precision oncology von Khan, Rayyan Tariq, Pokorna, Petra, Stourac, Jan, Borko, Simeon, Arefiev, Ihor, Planas-Iglesias, Joan, Dobias, Adam, Pinto, Gaspar, Szotkowska, Veronika, Sterba, Jaroslav, Slaby, Ondrej, Damborsky, Jiri, Mazurenko, Stanislav, Bednar, David

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SoluProtMutDB: A manually curated database of protein solubility changes upon mutations von Velecký, Jan, Hamsikova, Marie, Stourac, Jan, Musil, Milos, Damborsky, Jiri, Bednar, David, Mazurenko, Stanislav

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Fast Screening of Inhibitor Binding/Unbinding Using Novel Software Tool CaverDock von Pinto, Gaspar P., Vavra, Ondrej, Filipovic, Jiri, Stourac, Jan, Bednar, David, Damborsky, Jiri

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Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web von Musil, Milos, Jezik, Andrej, Jankujova, Marie, Stourac, Jan, Galgonek, Jakub, Mustafa Eyrilmez, Saltuk, Vondrasek, Jiri, Damborsky, Jiri, Bednar, David

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Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport von Stourac, Jan, Vavra, Ondrej, Kokkonen, Piia, Filipovic, Jiri, Pinto, Gaspar, Brezovsky, Jan, Damborsky, Jiri, Bednar, David

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FireProt(DB): database of manually curated protein stability data von Stourac, Jan, Dubrava, Juraj, Musil, Milos, Horackova, Jana, Damborsky, Jiri, Mazurenko, Stanislav, Bednar, David

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Top 10 metrics for life science software good practices [version 1; peer review: 2 approved] von Artaza, Haydee, Chue Hong, Neil, Corpas, Manuel, Corpuz, Angel, Hooft, Rob, Jiménez, Rafael C, Leskošek, Brane, Olivier, Brett G, Stourac, Jan, Svobodová Vařeková, Radka, Van Parys, Thomas, Vaughan, Daniel

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FireProt: web server for automated design of thermostable proteins von Musil, Milos, Stourac, Jan, Bendl, Jaroslav, Brezovsky, Jan, Prokop, Zbynek, Zendulka, Jaroslav, Martinek, Tomas, Bednar, David, Damborsky, Jiri

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CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels von Vavra, Ondrej, Filipovic, Jiri, Plhak, Jan, Bednar, David, Marques, Sergio M, Brezovsky, Jan, Stourac, Jan, Matyska, Ludek, Damborsky, Jiri

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FireProt(ASR): A Web Server for Fully Automated Ancestral Sequence Reconstruction von Musil, Milos, Khan, Rayyan Tariq, Beier, Andy, Stourac, Jan, Konegger, Hannes, Damborsky, Jiri, Bednar, David

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Computational design of enzymes for biotechnological applications von Planas-Iglesias, Joan, Marques, Sérgio M., Pinto, Gaspar P., Musil, Milos, Stourac, Jan, Damborsky, Jiri, Bednar, David

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pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support von Vavra, Ondrej, Beranek, Jakub, Stourac, Jan, Surkovsky, Martin, Filipovic, Jiri, Damborsky, Jiri, Martinovic, Jan, Bednar, David

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