DeepDTA: deep drug-target binding affinity prediction von Öztürk, Hakime, Özgür, Arzucan, Ozkirimli, Elif

Volltext

Identifying gene-disease associations using centrality on a literature mined gene-interaction network von Özgür, Arzucan, Vu, Thuy, Erkan, Güneş, Radev, Dragomir R.

Volltext

Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels von Tiftikci, Mert, Özgür, Arzucan, He, Yongqun, Hur, Junguk

Volltext

GLASS: a comprehensive database for experimentally validated GPCR-ligand associations von Chan, Wallace K B, Zhang, Hongjiu, Yang, Jianyi, Brender, Jeffrey R, Hur, Junguk, Özgür, Arzucan, Zhang, Yang

Volltext

PHISTO: pathogen-host interaction search tool von Durmuş Tekir, Saliha, Çakır, Tunahan, Ardiç, Emre, Sayılırbaş, Ali Semih, Konuk, Gökhan, Konuk, Mithat, Sarıyer, Hasret, Uğurlu, Azat, Karadeniz, İlknur, Özgür, Arzucan, Sevilgen, Fatih Erdoğan, Ülgen, Kutlu Ö

Volltext

Exploring data‐driven chemical SMILES tokenization approaches to identify key protein–ligand binding moieties von Temizer, Asu Busra, Uludoğan, Gökçe, Özçelik, Rıza, Koulani, Taha, Ozkirimli, Elif, Ulgen, Kutlu O., Karali, Nilgun, Özgür, Arzucan

Volltext

A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction von Öztürk, Hakime, Ozkirimli, Elif, Özgür, Arzucan

Volltext

A novel gene selection method for gene expression data for the task of cancer type classification von Özcan ŞİmŞek, N Özlem, ÖzgÜr, Arzucan, GÜrgen, Fikret

Volltext

Resources for Turkish dependency parsing: introducing the BOUN Treebank and the BoAT annotation tool von Türk, Utku, Atmaca, Furkan, Özateş, Şaziye Betül, Berk, Gözde, Bedir, Seyyit Talha, Köksal, Abdullatif, Başaran, Balkız Öztürk, Güngör, Tunga, Özgür, Arzucan

Volltext

Statistical representation models for mutation information within genomic data von Özcan Şimşek, N Özlem, Özgür, Arzucan, Gürgen, Fikret

Volltext

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine von Islamaj Doğan, Rezarta, Kim, Sun, Chatr-aryamontri, Andrew, Wei, Chih-Hsuan, Comeau, Donald C, Antunes, Rui, Matos, Sérgio, Chen, Qingyu, Elangovan, Aparna, Panyam, Nagesh C, Verspoor, Karin, Liu, Hongfang, Wang, Yanshan, Liu, Zhuang, Altınel, Berna, Hüsünbeyi, Zehra Melce, Özgür, Arzucan, Fergadis, Aris, Wang, Chen-Kai, Dai, Hong-Jie, Tran, Tung, Kavuluru, Ramakanth, Luo, Ling, Steppi, Albert, Zhang, Jinfeng, Qu, Jinchan, Lu, Zhiyong

Volltext

Michigan molecular interactions r2: from interacting proteins to pathways von Tarcea, V. Glenn, Weymouth, Terry, Ade, Alex, Bookvich, Aaron, Gao, Jing, Mahavisno, Vasudeva, Wright, Zach, Chapman, Adriane, Jayapandian, Magesh, Özgür, Arzucan, Tian, Yuanyuan, Cavalcoli, Jim, Mirel, Barbara, Patel, Jignesh, Radev, Dragomir, Athey, Brian, States, David, Jagadish, H. V.

Volltext

Exploring chemical space using natural language processing methodologies for drug discovery von Öztürk, Hakime, Özgür, Arzucan, Schwaller, Philippe, Laino, Teodoro, Ozkirimli, Elif

Volltext

Generative language models on nucleotide sequences of human genes von İhtiyar, Musa Nuri, Özgür, Arzucan

Volltext

BIOSSES: a semantic sentence similarity estimation system for the biomedical domain von Sogancioglu, Gizem, Öztürk, Hakime, Özgür, Arzucan

Volltext

Linking entities through an ontology using word embeddings and syntactic re-ranking von Karadeniz, İlknur, Özgür, Arzucan

Volltext

Literature Mining and Ontology based Analysis of Host-Brucella Gene-Gene Interaction Network von Karadeniz, İlknur, Hur, Junguk, He, Yongqun, Özgür, Arzucan

Volltext

Segmenting hashtags and analyzing their grammatical structure von Çelebi, Arda, Özgür, Arzucan

Volltext

A novel methodology on distributed representations of proteins using their interacting ligands von Öztürk, Hakime, Ozkirimli, Elif, Özgür, Arzucan

Volltext

Cluster-based mention typing for named entity disambiguation von Çelebi, Arda, Özgür, Arzucan

Volltext