Transmembrane β-Barrel Proteins: Methods and Protocols

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Novel lineage‐specific transmembrane β‐barrel proteins in the endoplasmic reticulum of Entamoeba histolytica von Santos, Herbert J., Imai, Kenichiro, Makiuchi, Takashi, Tomii, Kentaro, Horton, Paul, Nozawa, Akira, Okada, Kenta, Tozawa, Yuzuru, Nozaki, Tomoyoshi

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BOCTOPUS: improved topology prediction of transmembrane β barrel proteins von Hayat, Sikander, Elofsson, Arne

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Recombinant Expression and Overproduction of Transmembrane β-Barrel Proteins von Meuskens, Ina, Leo, Jack C., Linke, Dirk

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Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins von Hayat, Sikander, Peters, Christoph, Shu, Nanjiang, Tsirigos, Konstantinos D, Elofsson, Arne

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BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins von Madeo, Giovanni, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita

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All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences von Hayat, Sikander, Sander, Chris, Marks, Debora S., Elofsson, Arne

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Single-Molecule Force Spectroscopy of Transmembrane β-Barrel Proteins von Thoma, Johannes, Sapra, K. Tanuj, Müller, Daniel J

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Analysis of Transmembrane β-Barrel Proteins by Native and Semi-native Polyacrylamide Gel Electrophoresis von Morales, Violette, Orenday-Tapia, Luis, Ieva, Raffaele

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TMBpro: secondary structure, β-contact and tertiary structure prediction of transmembrane β-barrel proteins von Randall, Arlo, Cheng, Jianlin, Sweredoski, Michael, Baldi, Pierre

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Ranking models of transmembrane β-barrel proteins using Z-coordinate predictions von Hayat, Sikander, Elofsson, Arne

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On permuted super-secondary structures of transmembrane β-barrel proteins von Tran, Van Du T., Chassignet, Philippe, Steyaert, Jean-Marc

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Modeling ensembles of transmembrane β-barrel proteins von Waldispühl, Jérôme, O'Donnell, Charles W., Devadas, Srinivas, Clote, Peter, Berger, Bonnie

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Assessing the Outer Membrane Insertion and Folding of Multimeric Transmembrane β-Barrel Proteins von Leo, Jack C., Oberhettinger, Philipp, Linke, Dirk

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A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteins von Tran, Van Du T, Chassignet, Philippe, Sheikh, Saad, Steyaert, Jean-Marc

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TMB-Hunt: a web server to screen sequence sets for transmembrane β-barrel proteins von Garrow, Andrew G., Agnew, Alison, Westhead, David R.

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A consensus algorithm to screen genomes for novel families of transmembrane β barrel proteins von Garrow, Andrew G., Westhead, David R.

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Chapter Four: Transmembrane β-barrel proteins of bacteria: From structure to function

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One β Hairpin after the Other: Exploring Mechanical Unfolding Pathways of the Transmembrane β-Barrel Protein OmpG von Sapra, K. Tanuj, Damaghi, Mehdi, Köster, Stefan, Yildiz, Özkan, Kühlbrandt, Werner, Muller, Daniel J

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One β Hairpin Follows the Other: Exploring Refolding Pathways and Kinetics of the Transmembrane β-Barrel Protein OmpG von Damaghi, Mehdi, Köster, Stefan, Bippes, Christian A., Yildiz, Özkan, Müller, Daniel J.

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