Stem Cell Transcriptional Networks: Methods and Protocols

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HMGA1 reprograms somatic cells into pluripotent stem cells by inducing stem cell transcriptional networks von Shah, Sandeep N, Kerr, Candace, Cope, Leslie, Zambidis, Elias, Liu, Cyndi, Hillion, Joelle, Belton, Amy, Huso, David L, Resar, Linda M S

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Neural stem cell transcriptional networks highlight genes essential for nervous system development von Southall, Tony D, Brand, Andrea H

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Stem Cell Transcriptional Networks: Methods and Protocols von Kidder, Benjamin L

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Neural stem cell transcriptional networks highlight genes essential for nervous system development von Southall, TD, Brand, AH

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Hypoxia induces an early primitive streak signature, enhancing spontaneous elongation and lineage representation in gastruloids von López-Anguita, Natalia, Gassaloglu, Seher Ipek, Stötzel, Maximilian, Bolondi, Adriano, Conkar, Deniz, Typou, Marina, Buschow, René, Veenvliet, Jesse V, Bulut-Karslioglu, Aydan

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HMGA1: a master regulator of tumor progression in triple-negative breast cancer cells von Shah, Sandeep N, Cope, Leslie, Poh, Weijie, Belton, Amy, Roy, Sujayita, Talbot, Jr, C Conover, Sukumar, Saraswati, Huso, David L, Resar, Linda M S

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Genome-wide analysis of the oxyntic proliferative isthmus zone reveals ASPM as a possible gastric stem/progenitor cell marker over-expressed in cancer von Vange, Pål, Bruland, Torunn, Beisvag, Vidar, Erlandsen, Sten Even, Flatberg, Arnar, Doseth, Berit, Sandvik, Arne K, Bakke, Ingunn

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High Mobility Group A1 Chromatin Regulators Drive Regenerative Capacity during Stress Hematopoiesis through Modulation of TNF-α and Aging Transcriptional Networks von Thompson, Zanshe, Luo, Li Z, Wang, Bowen, Kim, Jung-Hyun, Woo, Hyunsung, Cope, Leslie, Resar, Linda

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Transcriptional networks in acute myeloid leukemia von Thoms, Julie A. I., Beck, Dominik, Pimanda, John E.

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High Mobility Group A1/2 Chromatin Remodeling Proteins Associate with Polycythemia Vera Transformation to Acute Leukemia in Humans and a JAK2 V617F Transgenic Mouse Model von Resar, Linda, Williams, Donna Marie, Zhao, Zhizhuang Joe, Rogers, Ophelia, Xian, Lingling, Spivak, Jerry L., Moliterno, Alison R

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A Novel Feed-Forward Loop Involving the High Mobility Group A1 (HMGA1) Chromatin Remodeling Protein and cMYC in Acute Myeloid Leukemia Is Targeted By JQ1 von Resar, Linda, Rushworth, Stuart A, Xian, Lingling, Bowles, Kristian

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High Mobility Group A1 (HMGA1) Chromatin Remodeling Protein Mediates Crosstalk Between Acute Myeloid Leukemia Blasts & the Tumor Microenvironment von Rushworth, Stuart A, Zaitseva, Lyubov, Xian, Lingling, Bowles, Kristian M, Resar, Linda M.S.

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Abstract 2601: HMGA1 is induced by procarcinogenic bacteria within the microbiome where it drives expansion in the colon stem cell pool and tumorigenesis von Resar, Linda M S, Xian, Lingling, Allen, Jawara, Wu, Shaoguang, Chia, Lionel, Sears, Cynthia

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Gene Ontology Semantic Similarity Analysis Using GOSemSim von Yu, Guangchuang

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Profiling Cell Type Abundance and Expression in Bulk Tissues with CIBERSORTx von Steen, Chloé B., Liu, Chih Long, Alizadeh, Ash A., Newman, Aaron M.

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Use Model-Based Analysis of ChIP-Seq (MACS) to Analyze Short Reads Generated by Sequencing Protein–DNA Interactions in Embryonic Stem Cells von Liu, Tao

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edgeR for Differential RNA-seq and ChIP-seq Analysis: An Application to Stem Cell Biology von Nikolayeva, Olga, Robinson, Mark D.

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A Description of the Molecular Signatures Database (MSigDB) Web Site von Liberzon, Arthur

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Spatial Clustering for Identification of ChIP-Enriched Regions (SICER) to Map Regions of Histone Methylation Patterns in Embryonic Stem Cells von Xu, Shiliyang, Grullon, Sean, Ge, Kai, Peng, Weiqun

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