Integrative single-cell analysis von Stuart, Tim, Satija, Rahul

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CD8+ T cell states in human cancer: insights from single-cell analysis von van der Leun, Anne M., Thommen, Daniela S., Schumacher, Ton N.

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Inhibitory CD161 receptor identified in glioma-infiltrating T cells by single-cell analysis von Mathewson, Nathan D., Ashenberg, Orr, Tirosh, Itay, Gritsch, Simon, Perez, Elizabeth M., Marx, Sascha, Jerby-Arnon, Livnat, Chanoch-Myers, Rony, Hara, Toshiro, Richman, Alyssa R., Ito, Yoshinaga, Pyrdol, Jason, Friedrich, Mirco, Schumann, Kathrin, Poitras, Michael J., Gokhale, Prafulla C., Gonzalez Castro, L. Nicolas, Shore, Marni E., Hebert, Christine M., Shaw, Brian, Cahill, Heather L., Drummond, Matthew, Zhang, Wubing, Olawoyin, Olamide, Wakimoto, Hiroaki, Rozenblatt-Rosen, Orit, Brastianos, Priscilla K., Liu, X. Shirley, Jones, Pamela S., Cahill, Daniel P., Frosch, Matthew P., Louis, David N., Freeman, Gordon J., Ligon, Keith L., Marson, Alexander, Chiocca, E. Antonio, Reardon, David A., Regev, Aviv, Suvà, Mario L., Wucherpfennig, Kai W.

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High-throughput and high-dimensional single-cell analysis of antigen-specific CD8+ T cells von Ma, Ke-Yue, Schonnesen, Alexandra A., He, Chenfeng, Xia, Amanda Y., Sun, Eric, Chen, Eunise, Sebastian, Katherine R., Guo, Yu-Wan, Balderas, Robert, Kulkarni-Date, Mrinalini, Jiang, Ning

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Single-cell analysis

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Orchestrating single-cell analysis with Bioconductor von Amezquita, Robert A., Lun, Aaron T. L., Becht, Etienne, Carey, Vince J., Carpp, Lindsay N., Geistlinger, Ludwig, Marini, Federico, Rue-Albrecht, Kevin, Risso, Davide, Soneson, Charlotte, Waldron, Levi, Pagès, Hervé, Smith, Mike L., Huber, Wolfgang, Morgan, Martin, Gottardo, Raphael, Hicks, Stephanie C.

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Single cell analysis: the new frontier in ‘omics’ von Wang, Daojing, Bodovitz, Steven

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Single Cell Analysis: Methods and Protocols

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Droplet Microfluidics-A Tool for Single-Cell Analysis von Joensson, Haakan N., Andersson Svahn, Helene

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Single‐cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma von Zheng, Hongping, Pomyen, Yotsawat, Hernandez, Maria Olga, Li, Caiyi, Livak, Ferenc, Tang, Wei, Dang, Hien, Greten, Tim F., Davis, Jeremy L., Zhao, Yongmei, Mehta, Monika, Levin, Yelena, Shetty, Jyoti, Tran, Bao, Budhu, Anuradha, Wang, Xin Wei

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Single-cell analysis by mass cytometry reveals metabolic states of early-activated CD8+ T cells during the primary immune response von Levine, Lauren S., Hiam-Galvez, Kamir J., Marquez, Diana M., Tenvooren, Iliana, Madden, Matthew Z., Contreras, Diana C., Dahunsi, Debolanle O., Irish, Jonathan M., Oluwole, Olalekan O., Rathmell, Jeffrey C., Spitzer, Matthew H.

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COVID-19 severity correlates with airway epithelium–immune cell interactions identified by single-cell analysis von Chua, Robert Lorenz, Lukassen, Soeren, Trump, Saskia, Hennig, Bianca P., Wendisch, Daniel, Pott, Fabian, Debnath, Olivia, Thürmann, Loreen, Kurth, Florian, Völker, Maria Theresa, Kazmierski, Julia, Timmermann, Bernd, Twardziok, Sven, Schneider, Stefan, Machleidt, Felix, Müller-Redetzky, Holger, Maier, Melanie, Krannich, Alexander, Schmidt, Sein, Balzer, Felix, Liebig, Johannes, Loske, Jennifer, Suttorp, Norbert, Eils, Jürgen, Ishaque, Naveed, Liebert, Uwe Gerd, von Kalle, Christof, Hocke, Andreas, Witzenrath, Martin, Goffinet, Christine, Drosten, Christian, Laudi, Sven, Lehmann, Irina, Conrad, Christian, Sander, Leif-Erik, Eils, Roland

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Best practices for single-cell analysis across modalities von Heumos, Lukas, Schaar, Anna C., Lance, Christopher, Litinetskaya, Anastasia, Drost, Felix, Zappia, Luke, Lücken, Malte D., Strobl, Daniel C., Henao, Juan, Curion, Fabiola, Schiller, Herbert B., Theis, Fabian J.

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High-dimensional single cell analysis identifies stem-like cytotoxic CD8 + T cells infiltrating human tumors von Brummelman, Jolanda, Mazza, Emilia M C, Alvisi, Giorgia, Colombo, Federico S, Grilli, Andrea, Mikulak, Joanna, Mavilio, Domenico, Alloisio, Marco, Ferrari, Francesco, Lopci, Egesta, Novellis, Pierluigi, Veronesi, Giulia, Lugli, Enrico

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Single-cell analysis reveals T cell infiltration in old neurogenic niches von Dulken, Ben W., Buckley, Matthew T., Navarro Negredo, Paloma, Saligrama, Naresha, Cayrol, Romain, Leeman, Dena S., George, Benson M., Boutet, Stéphane C., Hebestreit, Katja, Pluvinage, John V., Wyss-Coray, Tony, Weissman, Irving L., Vogel, Hannes, Davis, Mark M., Brunet, Anne

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Expression Analysis and Significance of PD-1, LAG-3, and TIM-3 in Human Non-Small Cell Lung Cancer Using Spatially Resolved and Multiparametric Single-Cell Analysis von Datar, Ila, Sanmamed, Miguel F, Wang, Jun, Henick, Brian S, Choi, Jungmin, Badri, Ti, Dong, Weilai, Mani, Nikita, Toki, Maria, Mejías, Luis D, Lozano, Maria D, Perez-Gracia, Jose Luis, Velcheti, Vamsidhar, Hellmann, Matthew D, Gainor, Justin F, McEachern, Kristen, Jenkins, David, Syrigos, Konstantinos, Politi, Katerina, Gettinger, Scott, Rimm, David L, Herbst, Roy S, Melero, Ignacio, Chen, Lieping, Schalper, Kurt A

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Single-Cell Analysis of Crohn’s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy von Martin, Jerome C., Chang, Christie, Boschetti, Gilles, Ungaro, Ryan, Giri, Mamta, Grout, John A., Gettler, Kyle, Chuang, Ling-shiang, Nayar, Shikha, Greenstein, Alexander J., Dubinsky, Marla, Walker, Laura, Leader, Andrew, Fine, Jay S., Whitehurst, Charles E., Mbow, M Lamine, Kugathasan, Subra, Denson, Lee A., Hyams, Jeffrey S., Friedman, Joshua R., Desai, Prerak T., Ko, Huaibin M., Laface, Ilaria, Akturk, Guray, Schadt, Eric E., Salmon, Helene, Gnjatic, Sacha, Rahman, Adeeb H., Merad, Miriam, Cho, Judy H., Kenigsberg, Ephraim

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Single-cell analysis of FOXP3 deficiencies in humans and mice unmasks intrinsic and extrinsic CD4+ T cell perturbations von Zemmour, David, Charbonnier, Louis-Marie, Leon, Juliette, Six, Emmanuelle, Keles, Sevgi, Delville, Marianne, Benamar, Mehdi, Baris, Safa, Zuber, Julien, Chen, Karin, Neven, Benedicte, Garcia-Lloret, Maria I., Ruemmele, Frank M., Brugnara, Carlo, Cerf-Bensussan, Nadine, Rieux-Laucat, Frederic, Cavazzana, Marina, André, Isabelle, Chatila, Talal A., Mathis, Diane, Benoist, Christophe

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Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex von Hrvatin, Sinisa, Hochbaum, Daniel R., Nagy, M. Aurel, Cicconet, Marcelo, Robertson, Keiramarie, Cheadle, Lucas, Zilionis, Rapolas, Ratner, Alex, Borges-Monroy, Rebeca, Klein, Allon M., Sabatini, Bernardo L., Greenberg, Michael E.

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Single-cell analysis reveals new evolutionary complexity in uveal melanoma von Durante, Michael A., Rodriguez, Daniel A., Kurtenbach, Stefan, Kuznetsov, Jeffim N., Sanchez, Margaret I., Decatur, Christina L., Snyder, Helen, Feun, Lynn G., Livingstone, Alan S., Harbour, J. William

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