Proteoform Identification: Methods and Protocols von Sun, Liangliang, Liu, Xiaowen

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TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization von Kou, Qiang, Xun, Likun, Liu, Xiaowen

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FLASHIda enables intelligent data acquisition for top–down proteomics to boost proteoform identification counts von Jeong, Kyowon, Babović, Maša, Gorshkov, Vladimir, Kim, Jihyung, Jensen, Ole N., Kohlbacher, Oliver

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RPLC-RPLC-MS/MS for Proteoform Identification von Cupp-Sutton, Kellye A., Wang, Zhe, Yu, Dahang, Wu, Si

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Comparing Top-Down Proteoform Identification: Deconvolution, PrSM Overlap, and PTM Detection von Tabb, David L., Jeong, Kyowon, Druart, Karen, Gant, Megan S., Brown, Kyle A., Nicora, Carrie, Zhou, Mowei, Couvillion, Sneha, Nakayasu, Ernesto, Williams, Janet E., Peterson, Haley K., McGuire, Michelle K., McGuire, Mark A., Metz, Thomas O., Chamot-Rooke, Julia

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Influence of different sample preparation approaches on proteoform identification by top-down proteomics von Kaulich, Philipp T., Jeong, Kyowon, Kohlbacher, Oliver, Tholey, Andreas

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Fast peak error correction algorithms for proteoform identification using top-down tandem mass spectra von Zhan, Zhaohui, Wang, Lusheng

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SPECTRUM – A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data von Basharat, Abdul Rehman, Iman, Kanzal, Khalid, Muhammad Farhan, Anwar, Zohra, Hussain, Rashid, Kabir, Humnah Gohar, Tahreem, Maria, Shahid, Anam, Humayun, Maheen, Hayat, Hira Azmat, Mustafa, Muhammad, Shoaib, Muhammad Ali, Ullah, Zakir, Zarina, Shamshad, Ahmed, Sameer, Uddin, Emad, Hamera, Sadia, Ahmad, Fayyaz, Chaudhary, Safee Ullah

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PERCEPTRON: an open-source GPU-accelerated proteoform identification pipeline for top-down proteomics von Khalid, Muhammad Farhan, Iman, Kanzal, Ghafoor, Amna, Saboor, Mujtaba, Ali, Ahsan, Muaz, Urwa, Basharat, Abdul Rehman, Tahir, Taha, Abubakar, Muhammad, Akhter, Momina Amer, Nabi, Waqar, Vanderbauwhede, Wim, Ahmad, Fayyaz, Wajid, Bilal, Chaudhary, Safee Ullah

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Proteoform Identification by Combining RNA-Seq and Top-Down Mass Spectrometry von Chen, Wenrong, Liu, Xiaowen

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Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top‐Down Mass Spectrometry von Kou, Qiang, Wu, Si, Liu, Xiaowen

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Proteoform identification based on top-down tandem mass spectra with peak error corrections von Zhan, Zhaohui, Wang, Lusheng

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Continuous Elution Proteoform Identification of Myelin Basic Protein by Superficially Porous Reversed-Phase Liquid Chromatography and Fourier Transform Mass Spectrometry von Plymire, Daniel A, Wing, Casey E, Robinson, Dana E, Patrie, Steven M

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Accurate Proteoform Identification and Quantitation Using pTop 2.0 von Sun, Rui-Xiang, Wang, Rui-Min, Luo, Lan, Liu, Chao, Chi, Hao, Zeng, Wen-Feng, He, Si-Min

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A graph-based approach for proteoform identification and quantification using top-down homogeneous multiplexed tandem mass spectra von Zhu, Kaiyuan, Liu, Xiaowen

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Protamine Characterization by Top-Down Proteomics: Boosting Proteoform Identification with DBSCAN von Arauz-Garofalo, Gianluca, Jodar, Meritxell, Vilanova, Mar, de la Iglesia Rodriguez, Alberto, Castillo, Judit, Soler-Ventura, Ada, Oliva, Rafael, Vilaseca, Marta, Gay, Marina

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Proteoform Identification and Quantification Using Intact Protein Database Search Engine ProteinGoggle von Qin, Suideng, Tian, Zhixin

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Top-Down Mass Spectrometry Data Analysis Using TopPIC Suite von Choi, In Kwon, Liu, Xiaowen

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Proteoform characterization based on top-down mass spectrometry von Zhong, Jiancheng, Sun, Yusui, Xie, Minzhu, Peng, Wei, Zhang, Chushu, Wu, Fang-Xiang, Wang, Jianxin

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A Graph-Based Approach for Proteoform Identification and Quantification Using Homogeneous Multiplexed Top-Down Tandem Mass Spectra

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