Publisher Correction: npj Systems Biology and Applications, volume 5

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Erratum: Publisher Correction: npj Systems Biology and Applications, volume 5 von npj Systems Biology and Applications

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Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs von Mondeel, Thierry D. G. A., Ivanov, Oleksandr, Westerhoff, Hans V., Liebermeister, Wolfram, Barberis, Matteo

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Correction: Corrigendum: Pathway on demand: automated reconstruction of human signaling networks von Ritz, Anna, Poirel, Christopher L, Tegge, Allison N, Sharp, Nicholas, Simmons, Kelsey, Powell, Allison, Kale, Shiv D, Murali, TM

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A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data von Costello, Zak, Martin, Hector Garcia

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Mitigating the risk of cytokine release syndrome in a Phase I trial of CD20/CD3 bispecific antibody mosunetuzumab in NHL: impact of translational system modeling von Hosseini, Iraj, Gadkar, Kapil, Stefanich, Eric, Li, Chi-Chung, Sun, Liping L., Chu, Yu-Waye, Ramanujan, Saroja

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From expression footprints to causal pathways: contextualizing large signaling networks with CARNIVAL von Liu, Anika, Trairatphisan, Panuwat, Gjerga, Enio, Didangelos, Athanasios, Barratt, Jonathan, Saez-Rodriguez, Julio

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Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery von Paci, Paola, Fiscon, Giulia, Conte, Federica, Wang, Rui-Sheng, Farina, Lorenzo, Loscalzo, Joseph

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The multiplex network of human diseases von Halu, Arda, De Domenico, Manlio, Arenas, Alex, Sharma, Amitabh

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Synthetic and systems biology for microbial production of commodity chemicals von Chubukov, Victor, Mukhopadhyay, Aindrila, Petzold, Christopher J, Keasling, Jay D, Martín, Héctor García

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Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control von Li, Chien-Ting, Eng, Richard, Zuniga, Cristal, Huang, Kai-Wen, Chen, Yiqun, Zengler, Karsten, Betenbaugh, Michael J.

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Environmental flexibility does not explain metabolic robustness von Libiseller-Egger, Julian, Coltman, Benjamin Luke, Gerstl, Matthias P, Zanghellini, Jürgen

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iOmicsPASS: network-based integration of multiomics data for predictive subnetwork discovery von Koh, Hiromi W. L., Fermin, Damian, Vogel, Christine, Choi, Kwok Pui, Ewing, Rob M., Choi, Hyungwon

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Adaptive coding for DNA storage with high storage density and low coverage von Cao, Ben, Zhang, Xiaokang, Cui, Shuang, Zhang, Qiang

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Predicting stress response and improved protein overproduction in Bacillus subtilis von Tibocha-Bonilla, Juan D., Zuñiga, Cristal, Lekbua, Asama, Lloyd, Colton, Rychel, Kevin, Short, Katie, Zengler, Karsten

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"Digital twins elucidate critical role of T scm in clinical persistence of TCR-engineered cell therapy" von Joslyn, Louis R, Huang, Weize, Miles, Dale, Hosseini, Iraj, Ramanujan, Saroja

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Prevalence and patterns of higher-order drug interactions in Escherichia coli von Tekin, Elif, White, Cynthia, Kang, Tina Manzhu, Singh, Nina, Cruz-Loya, Mauricio, Damoiseaux, Robert, Savage, Van M., Yeh, Pamela J.

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Combinatorial interventions inhibit TGFβ-driven epithelial-to-mesenchymal transition and support hybrid cellular phenotypes von Steinway, Steven Nathaniel, Zañudo, Jorge Gomez Tejeda, Michel, Paul J, Feith, David J, Loughran, Thomas P, Albert, Reka

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ROS networks: designs, aging, Parkinson’s disease and precision therapies von N. Kolodkin, Alexey, Sharma, Raju Prasad, Colangelo, Anna Maria, Ignatenko, Andrew, Martorana, Francesca, Jennen, Danyel, Briedé, Jacco J., Brady, Nathan, Barberis, Matteo, Mondeel, Thierry D. G. A., Papa, Michele, Kumar, Vikas, Peters, Bernhard, Skupin, Alexander, Alberghina, Lilia, Balling, Rudi, Westerhoff, Hans V.

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Identifying inhibitors of epithelial–mesenchymal plasticity using a network topology-based approach von Hari, Kishore, Sabuwala, Burhanuddin, Subramani, Balaram Vishnu, La Porta, Caterina A. M., Zapperi, Stefano, Font-Clos, Francesc, Jolly, Mohit Kumar

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