The journey towards complete and accurate prediction of HLA antigen presentation von Nilsson, Jonas Birkelund, Nielsen, Morten

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Lessons learned from the IMMREP23 TCR-epitope prediction challenge von Nielsen, Morten, Eugster, Anne, Jensen, Mathias Fynbo, Goel, Manisha, Tiffeau-Mayer, Andreas, Pelissier, Aurelien, Valkiers, Sebastiaan, Martínez, María Rodríguez, Meynard-Piganeeau, Barthélémy, Greiff, Victor, Mora, Thierry, Walczak, Aleksandra M., Croce, Giancarlo, Moreno, Dana L, Gfeller, David, Meysman, Pieter, Barton, Justin

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Multicohort analysis identifies conserved transcriptional interactions between humans and Plasmodium falciparum von Silva, Bárbara Fernandes, Silva, Nágila Isleide, Souza, Pedro Felipe Loyola, Guimarães, Tiago Paiva, Gardinassi, Luiz Gustavo

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Navigating the immunosuppressive brain tumor microenvironment using spatial biology von Widodo, Samuel S., Dinevska, Marija, Stylli, Stanley S., Martinelli, Adriano L., Rapsomaniki, Marianna, Mantamadiotis, Theo

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SARS-CoV-2-identical protein regions found in mammalian coronaviruses have immunogenic potential and can imply cross-protection von Lopes, Luciano Rodrigo

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Guiding a language-model based protein design method towards MHC Class-I immune-visibility targets in vaccines and therapeutics von Gasser, Hans-Christof, Oyarzún, Diego A., Rajan, Ajitha, Alfaro, Javier Antonio

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Epitopedia: identifying molecular mimicry between pathogens and known immune epitopes von Balbin, Christian A, Nunez-Castilla, Janelle, Stebliankin, Vitalii, Baral, Prabin, Sobhan, Masrur, Cickovski, Trevor, Mondal, Ananda Mohan, Narasimhan, Giri, Chapagain, Prem, Mathee, Kalai, Siltberg-Liberles, Jessica

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Scifer: An R/Bioconductor package for large-scale integration of Sanger sequencing and flow cytometry data of index-sorted single cells von Arcoverde Cerveira, Rodrigo, Lenart, Klara, Martin, Marcel, Hinchcliff, Matthew James, Hellgren, Fredrika, Ye, Kewei, Assis Geraldo, Juliana, Kreslavsky, Taras, Ols, Sebastian, Loré, Karin

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In silico modelling of CD8 T cell immune response links genetic regulation to population dynamics von Nguyen, Thi Nhu Thao, Martin, Madge, Arpin, Christophe, Bernard, Samuel, Gandrillon, Olivier, Crauste, Fabien

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Benchmarking solutions to the T-cell receptor epitope prediction problem: IMMREP22 workshop report von Meysman, Pieter, Barton, Justin, Bravi, Barbara, Cohen-Lavi, Liel, Karnaukhov, Vadim, Lilleskov, Elias, Montemurro, Alessandro, Nielsen, Morten, Mora, Thierry, Pereira, Paul, Postovskaya, Anna, Martínez, María Rodríguez, Fernandez-de-Cossio-Diaz, Jorge, Vujkovic, Alexandra, Walczak, Aleksandra M., Weber, Anna, Yin, Rose, Eugster, Anne, Sharma, Virag

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To what extent does MHC binding translate to immunogenicity in humans? von Lee, Chloe H., Antanaviciute, Agne, Buckley, Paul R., Simmons, Alison, Koohy, Hashem

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Deep learning for the detection of microsatellite instability from histology images in colorectal cancer: A systematic literature review von Echle, Amelie, Laleh, Narmin Ghaffari, Schrammen, Peter L., West, Nicholas P., Trautwein, Christian, Brinker, Titus J., Gruber, Stephen B., Buelow, Roman D., Boor, Peter, Grabsch, Heike I., Quirke, Philip, Kather, Jakob N.

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A computational and experimental approach to studying NFkB signaling in response to single, dual, and triple TLR signaling von Newman, Thalia, Taylor, Annarose, Naik, Sakhi, Pandey, Swati, Manalang, Kimberly, Kurt, Robert A., Liew, Chun Wai

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In silico design and evaluation of a multi-epitope and multi-antigenic African swine fever vaccine von Buan, Ara Karizza G., Reyes, Nico Alexander L., Pineda, Ryan Nikkole B., Medina, Paul Mark B.

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ImmunoInformatics: at the crossroads between immunology and informatics, and beyond von Halama, Niels, Levy, Doron

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Computational modelling of immunological mechanisms: From statistical approaches to interpretable machine learning von Rodríguez Martínez, María, Barberis, Matteo, Niarakis, Anna

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Modelling rheumatoid arthritis: A hybrid modelling framework to describe pannus formation in a small joint von Macfarlane, Fiona R., Chaplain, Mark A.J., Eftimie, Raluca

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Immunoinformatics: Pushing the boundaries of immunology research and medicine von Chatanaka, Miyo K., Ulndreaj, Antigona, Sohaei, Dorsa, Prassas, Ioannis

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In silico single-cell metabolism analysis unravels a new transition stage of CD8 T cells 4 days post-infection von Arpin, Christophe, Picard, Franck, Gandrillon, Olivier

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A comparison of clustering models for inference of T cell receptor antigen specificity von Hudson, Dan, Lubbock, Alex, Basham, Mark, Koohy, Hashem

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