Biological Networks and Pathway Analysis von Tatarinova, Tatiana V, Nikolsky, Yuri

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Mathematical Justification of Expression-Based Pathway Activation Scoring (PAS) von Aliper, Alexander M., Korzinkin, Michael B., Kuzmina, Natalia B., Zenin, Alexander A., Venkova, Larisa S., Smirnov, Philip Yu, Zhavoronkov, Alex A., Buzdin, Anton A., Borisov, Nikolay M.

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Bioinformatics Meets Biomedicine: OncoFinder, a Quantitative Approach for Interrogating Molecular Pathways Using Gene Expression Data von Buzdin, Anton A., Prassolov, Vladimir, Zhavoronkov, Alex A., Borisov, Nikolay M.

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Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated “Knowledge-Based” Platform von Dubovenko, Alexey, Nikolsky, Yuri, Rakhmatulin, Eugene, Nikolskaya, Tatiana

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ArrayTrack: An FDA and Public Genomic Tool von Fang, Hong, Harris, Stephen C., Su, Zhenjiang, Chen, Minjun, Qian, Feng, Shi, Leming, Perkins, Roger, Tong, Weida

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sbv IMPROVER: Modern Approach to Systems Biology von Guryanova, Svetlana, Guryanova, Anna

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A Weighted SNP Correlation Network Method for Estimating Polygenic Risk Scores von Levine, Morgan E., Langfelder, Peter, Horvath, Steve

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Analysis of cis-Regulatory Elements in Gene Co-expression Networks in Cancer von Triska, Martin, Ivliev, Alexander, Nikolsky, Yuri, Tatarinova, Tatiana V.

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Semantic Data Integration and Knowledge Management to Represent Biological Network Associations von Losko, Sascha, Heumann, Klaus

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Identification of Transcriptional Regulators of Psoriasis from RNA-Seq Experiments von Zolotarenko, Alena, Chekalin, Evgeny, Mehta, Rohini, Baranova, Ancha, Tatarinova, Tatiana V., Bruskin, Sergey

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Functional Network Disruptions in Schizophrenia von Rish, Irina, Cecchi, Guillermo A.

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Rule Mining Techniques to Predict Prokaryotic Metabolic Pathways von Saidi, Rabie, Boudellioua, Imane, Martin, Maria J., Solovyev, Victor

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Mathematical Modeling of Avidity Distribution and Estimating General Binding Properties of Transcription Factors from Genome-Wide Binding Profiles von Kuznetsov, Vladimir A.

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Comprehensive Analyses of Tissue-Specific Networks with Implications to Psychiatric Diseases von Lin, Guan Ning, Corominas, Roser, Nam, Hyun-Jun, Urresti, Jorge, Iakoucheva, Lilia M.

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Search for Master Regulators in Walking Cancer Pathways von Kel, Alexander E.

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Pharmacologic Manipulation of Wnt Signaling and Cancer Stem Cells von Duchartre, Yann, Kim, Yong-Mi, Kahn, Michael

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Extracting the Strongest Signals from Omics Data: Differentially Expressed Pathways and Beyond von Glazko, Galina, Rahmatallah, Yasir, Zybailov, Boris, Emmert-Streib, Frank

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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks von D’Souza, Mark, Sulakhe, Dinanath, Wang, Sheng, Xie, Bing, Hashemifar, Somaye, Taylor, Andrew, Dubchak, Inna, Conrad Gilliam, T., Maltsev, Natalia

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Knowledge-Based Compact Disease Models: A Rapid Path from High-Throughput Data to Understanding Causative Mechanisms for a Complex Disease von Mayburd, Anatoly, Baranova, Ancha

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A Practical Guide to Quantitative Interactor Screening with Next-Generation Sequencing (QIS-Seq) von Gong, Yunchen, Desveaux, Darrell, Guttman, David S., Lewis, Jennifer D.

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